MirGeneDB 2.1

MirGeneDB ID

Mml-Mir-542-v2

Family name MIR-542 (all species)
Seed UGUGACA
Species Rhesus monkey (Macaca mulatta)
MiRBase ID mml-mir-542
Paralogues Mml-Mir-542-v1 
Orthologues Bta-Mir-542  Cfa-Mir-542-v2  Cpo-Mir-542  Dno-Mir-542-v2  Ete-Mir-542  Hsa-Mir-542-v2  Mmu-Mir-542  Ocu-Mir-542-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rheMac8_trace)
chrX: 128513155-128513211 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-542-v2)
Mir-450-P3 chrX: 128511991-128512048 [-] UCSC Ensembl
Mir-450-P2 chrX: 128512154-128512210 [-] UCSC Ensembl
Mir-450-P1 chrX: 128512325-128512381 [-] UCSC Ensembl
Mir-542-v1 chrX: 128513154-128513212 [-] UCSC Ensembl
Mir-542-v2 chrX: 128513155-128513211 [-] UCSC Ensembl
Mir-15-P2c chrX: 128518112-128518174 [-] UCSC Ensembl
Mir-15-P1c chrX: 128518445-128518503 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGUCAAGGAUGCACAGACCUCAGACAUCUCGGGGAUCAUCAUGUCACGAGAUACCACUGUGCACUUGUGACAGAUUGAUAACUGAAAGGUCUGGGAGCCAUUCAUCUUCAUAGCAA
Get precursor sequence
Structure
        10          20        30        40        50        
CAGUCAAGGAUGCACAGAC--|      AUC    GG    UCA         AUACCA 
                     CUCAGAC   UCGG  AUCA   UGUCACGAG      \
                     GGGUCUG   AGUC  UAGU   ACAGUGUUC      C
AACGAUACUUCUACUUACCGA^      GAA    AA    UAG         ACGUGU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br Br Br He Ki Li Lu Ly Sk Sp Te Th
Star sequence

Mml-Mir-542-v2_5p* (predicted)

mirBase accessionMIMAT0006406
Sequence
0- CGGGGAUCAUCAUGUCACGAGA -22
Get sequence
Proposed targets TargetScanVert: mml-miR-542-5p
Mature sequence

Mml-Mir-542-v2_3p

mirBase accessionMIMAT0006407
Sequence
35- UUGUGACAGAUUGAUAACUGAA -57
Get sequence
Proposed targets TargetScanVert: mml-miR-542-3p