MirGeneDB ID | Pab-Mir-542 |
---|---|
Family name | MIR-542 (all species) |
Seed | GUGACAG |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | |
Orthologues | Bta-Mir-542 Cfa-Mir-542-v1 Cfa-Mir-542-v2 Cja-Mir-542 Cpo-Mir-542 Dno-Mir-542-v1 Dno-Mir-542-v2 Eca-Mir-542-v1 Eca-Mir-542-v2 Ete-Mir-542 Hsa-Mir-542-v1 Hsa-Mir-542-v2 Laf-Mir-542 Mml-Mir-542-v1 Mml-Mir-542-v2 Mmr-Mir-542-v1 Mmr-Mir-542-v2 Mmu-Mir-542 Ocu-Mir-542-v1 Ocu-Mir-542-v2 Rno-Mir-542-P1a Rno-Mir-542-P1b Rno-Mir-542-P1c |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 140562939-140562997 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UCGGUCAAGGAUGCACAGAUCUCAGACAUCUCGGGGAUCAUCAUGUCACGAGAUACCAGUGUGCACUUGUGACAGAUUGAUAACUGAAAGGUCUGGGAGCCACUCAUCUUCGUAGCAAAGet precursor sequence |
Structure | 10 20 30 40 50 UCGGUCAAGGAUGCACAGA--| AUC GG UCA AUACCA UCUCAGAC UCGG AUCA UGUCACGAG \ AGGGUCUG AGUC UAGU ACAGUGUUC G AAACGAUGCUUCUACUCACCG^ GAA AA UAG ACGUGU 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | CNNC at 3p(+17) |
Star sequence | Pab-Mir-542_5p* (predicted) |
mirBase accession | None |
Sequence |
0- UCGGGGAUCAUCAUGUCACGAG -22
Get sequence
|
Mature sequence | Pab-Mir-542_3p |
mirBase accession | None |
Sequence |
37- UGUGACAGAUUGAUAACUGAAA -59
Get sequence
|