MirGeneDB 3.0
MirGeneDB ID

Dno-Mir-542-v1

Family name MIR-542 (all species)
Seed GUGACAG
Species Nine-banded armadillo (Dasypus novemcinctus)
MiRBase ID dno-mir-542
Paralogues Dno-Mir-542-v2 
Orthologues Bta-Mir-542  Cfa-Mir-542-v1  Cja-Mir-542  Cpo-Mir-542  Eca-Mir-542-v1  Ete-Mir-542  Hsa-Mir-542-v1  Laf-Mir-542  Mml-Mir-542-v1  Mmr-Mir-542-v1  Mmu-Mir-542  Ocu-Mir-542-v1  Pab-Mir-542 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(dasNov3)		 JH573198: 468016-468075 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-542-v1)		 Mir-15-P1c JH573198: 462451-462509 [+] UCSC Ensembl
Mir-15-P2c JH573198: 462819-462881 [+] UCSC Ensembl
Mir-542-v1 JH573198: 468016-468075 [+] UCSC Ensembl
Mir-542-v2 JH573198: 468017-468074 [+] UCSC Ensembl
Mir-450-P1 JH573198: 468836-468892 [+] UCSC Ensembl
Mir-450-P2 JH573198: 468989-469045 [+] UCSC Ensembl
Mir-450-P3 JH573198: 469158-469215 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGGCUCAAGAAGCACAGACCUCAGACAUCUCGGGGAUCAUCAUGUCACGAGAUACCCACUGUGCACUUGUGACAGAUUGAUAACUGAAAGGUCUGAGAGCCACUCACCUUCAUAGCAUU
Get precursor sequence
Structure
        10        20          30        40        50         
GAGGCUCAAGAAGCACAGAC--|      AUC    GG    UCA         AUACCC 
                      CUCAGAC   UCGG  AUCA   UGUCACGAG      A
                      GAGUCUG   AGUC  UAGU   ACAGUGUUC      C
UUACGAUACUUCCACUCACCGA^      GAA    AA    UAG         ACGUGU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Dno-Mir-542-v1_5p*
mirBase accessionMIMAT0047969
Sequence 
0- UCGGGGAUCAUCAUGUCACGAG -22
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Mature sequence

Dno-Mir-542-v1_3p
mirBase accessionMIMAT0047970
Sequence 
38- UGUGACAGAUUGAUAACUGAAA -60
Get sequence