| MirGeneDB ID | Laf-Mir-542 |
|---|---|
| Family name | MIR-542 (all species) |
| Seed | GUGACAG |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-542 Cfa-Mir-542-v1 Cfa-Mir-542-v2 Cja-Mir-542 Cpo-Mir-542 Dno-Mir-542-v1 Dno-Mir-542-v2 Eca-Mir-542-v1 Eca-Mir-542-v2 Ete-Mir-542 Hsa-Mir-542-v1 Hsa-Mir-542-v2 Mml-Mir-542-v1 Mml-Mir-542-v2 Mmr-Mir-542-v1 Mmr-Mir-542-v2 Mmu-Mir-542 Ocu-Mir-542-v1 Ocu-Mir-542-v2 Pab-Mir-542 Rno-Mir-542-P1a Rno-Mir-542-P1b Rno-Mir-542-P1c |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010127.1: 4458476-4458534 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GGGGUCAAGGAUGCACAGACCUCAGACAUUUCGGGGAUCAUCAUGUCACGAGAUACCACUGUGCACUUGUGACAGAUUGAUAACUGAAAGGUCUGGGAGCCACUCAUCUUCGUAGCAAUGet precursor sequence |
| Structure | 10 20 30 40 50 GGGGUCAAGGAUGCACAGAC--| A GG UCA AUACCA CUCAGAC UUUCGG AUCA UGUCACGAG \ GGGUCUG AAAGUC UAGU ACAGUGUUC C UAACGAUGCUUCUACUCACCGA^ G AA UAG ACGUGU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Laf-Mir-542_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- UCGGGGAUCAUCAUGUCACGAG -22
Get sequence
|
| Mature sequence | Laf-Mir-542_3p (predicted) |
| mirBase accession | None |
| Sequence |
37- UGUGACAGAUUGAUAACUGAAA -59
Get sequence
|
