MirGeneDB 3.0

MirGeneDB ID

Mmr-Mir-542-v1

Family name MIR-542 (all species)
Seed GUGACAG
Species Gray mouse lemur (Microcebus murinus)
MiRBase ID mmr-mir-542
Paralogues Mmr-Mir-542-v2 
Orthologues Bta-Mir-542  Cfa-Mir-542-v1  Cja-Mir-542  Cpo-Mir-542  Dno-Mir-542-v1  Eca-Mir-542-v1  Ete-Mir-542  Hsa-Mir-542-v1  Laf-Mir-542  Mml-Mir-542-v1  Mmu-Mir-542  Ocu-Mir-542-v1  Pab-Mir-542 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_000165445.3_Mmur_3.0_genomic)
CM007693.1: 64871640-64871698 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-542-v1)
Mir-542-v1 CM007693.1: 64871640-64871698 [-] UCSC Ensembl
Mir-542-v2 CM007693.1: 64871641-64871697 [-] UCSC Ensembl
Mir-15-P1c CM007693.1: 64876908-64876966 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGGUCAAGGAUGCACAGACCUCAGACAUCUCGGGGAUCAUCAUGUCACGAGAUACCACUGUGCACUUGUGACAGAUUGAUAACUGAAACGUCUGAGAGCCACUCACCUUCAGAGCAAC
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Structure
        10        20          30        40        50         
GGGGUCAAGGAUGCACAGAC--|      AUC    GG    UCA         AUACCA 
                      CUCAGAC   UCGG  AUCA   UGUCACGAG      \
                      GAGUCUG   AGUC  UAGU   ACAGUGUUC      C
CAACGAGACUUCCACUCACCGA^      CAA    AA    UAG         ACGUGU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Mu Mu Mu Mu Mu Mu Mu Mu
Star sequence

Mmr-Mir-542-v1_5p* (predicted)

mirBase accessionNone
Sequence
0- UCGGGGAUCAUCAUGUCACGAG -22
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Mature sequence

Mmr-Mir-542-v1_3p

mirBase accessionMIMAT0049224
Sequence
37- UGUGACAGAUUGAUAACUGAAA -59
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