MirGeneDB 3.0
MirGeneDB ID

Mml-Mir-542-v1

Family name MIR-542 (all species)
Seed GUGACAG
Species Rhesus monkey (Macaca mulatta)
MiRBase ID mml-mir-542
Paralogues Mml-Mir-542-v2 
Orthologues Bta-Mir-542  Cfa-Mir-542-v1  Cja-Mir-542  Cpo-Mir-542  Dno-Mir-542-v1  Eca-Mir-542-v1  Ete-Mir-542  Hsa-Mir-542-v1  Laf-Mir-542  Mmr-Mir-542-v1  Mmu-Mir-542  Ocu-Mir-542-v1  Pab-Mir-542 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_003339765.3_Mmul_10_traces)		 CM014356.1: 130805265-130805323 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-542-v1)		 Mir-450-P3 CM014356.1: 130804102-130804159 [-] UCSC Ensembl
Mir-450-P2 CM014356.1: 130804265-130804321 [-] UCSC Ensembl
Mir-450-P1 CM014356.1: 130804436-130804492 [-] UCSC Ensembl
Mir-542-v1 CM014356.1: 130805265-130805323 [-] UCSC Ensembl
Mir-542-v2 CM014356.1: 130805266-130805322 [-] UCSC Ensembl
Mir-15-P2c CM014356.1: 130810224-130810286 [-] UCSC Ensembl
Mir-15-P1c CM014356.1: 130810557-130810615 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCAGUCAAGGAUGCACAGACCUCAGACAUCUCGGGGAUCAUCAUGUCACGAGAUACCACUGUGCACUUGUGACAGAUUGAUAACUGAAAGGUCUGGGAGCCAUUCAUCUUCAUAGCAAA
Get precursor sequence
Structure
        10        20          30        40        50         
UCAGUCAAGGAUGCACAGAC--|      AUC    GG    UCA         AUACCA 
                      CUCAGAC   UCGG  AUCA   UGUCACGAG      \
                      GGGUCUG   AGUC  UAGU   ACAGUGUUC      C
AAACGAUACUUCUACUUACCGA^      GAA    AA    UAG         ACGUGU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bo Br Br Br He Ki Li Lu Ly Sk Sp Te Th
Star sequence

Mml-Mir-542-v1_5p*
mirBase accessionMIMAT0006406
Sequence 
0- UCGGGGAUCAUCAUGUCACGAG -22
Get sequence
Proposed targets TargetScanVert: mml-miR-542-5p
Mature sequence

Mml-Mir-542-v1_3p
mirBase accessionMIMAT0006407
Sequence 
37- UGUGACAGAUUGAUAACUGAAA -59
Get sequence
Proposed targets TargetScanVert: mml-miR-542-3p