Mir-542-v1

MirGeneDB ID

Eca-Mir-542-v1

Family name

MIR-542 (all species)

Seed

GUGACAG

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-542

Paralogues

Eca-Mir-542-v2

Orthologues

Bta-Mir-542 Cfa-Mir-542-v1 Cja-Mir-542 Cpo-Mir-542 Dno-Mir-542-v1 Ete-Mir-542 Hsa-Mir-542-v1 Laf-Mir-542 Mml-Mir-542-v1 Mmr-Mir-542-v1 Mmu-Mir-542 Ocu-Mir-542-v1 Pab-Mir-542

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 111016323-111016381 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-542-v1)

Mir-450-P3 CM009179.1: 111015235-111015292 [-] UCSC Ensembl
Mir-450-P2 CM009179.1: 111015405-111015461 [-] UCSC Ensembl
Mir-450-P1 CM009179.1: 111015538-111015594 [-] UCSC Ensembl
Mir-542-v1 CM009179.1: 111016323-111016381 [-] UCSC Ensembl
Mir-15-P2c CM009179.1: 111021117-111021179 [-] UCSC Ensembl
Mir-15-P1c CM009179.1: 111021472-111021530 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGAAAUUUUGAGUCAAGGACCUCAGACAUCUCGGGGAUCAUCAUGUCACGAGAUACCACUGUGCACUUGUGACAGAUUGAUAACUGAAAGGUCUGGGAGCCAUUCAUCCUCAUGGCAAU

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Structure

        10        20          30        40        50         
AGAAAUUUUGAGUCAAGGAC--|      AUC    GG    UCA         AUACCA 
                      CUCAGAC   UCGG  AUCA   UGUCACGAG      \
                      GGGUCUG   AGUC  UAGU   ACAGUGUUC      C
UAACGGUACUCCUACUUACCGA^      GAA    AA    UAG         ACGUGU 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Star sequence

Eca-Mir-542-v1_5p*

mirBase accession

MIMAT0013237

Sequence

0- UCGGGGAUCAUCAUGUCACGAG -22

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Mature sequence

Eca-Mir-542-v1_3p

mirBase accession

MIMAT0013238

Sequence

37- UGUGACAGAUUGAUAACUGAAA -59

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