MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-15-P2c

Family name MIR-15 (all species)
Seed AGCAGCG
Species Horse (Equus caballus)
MiRBase ID eca-mir-503
Paralogues Eca-Mir-15-P1a  Eca-Mir-15-P1b  Eca-Mir-15-P1c  Eca-Mir-15-P1d  Eca-Mir-15-P2a  Eca-Mir-15-P2b  Eca-Mir-15-P2d 
Orthologues Aca-Mir-15-P2c  Ami-Mir-15-P2c  Bta-Mir-15-P2c  Cfa-Mir-15-P2c  Cin-Mir-15-P2  Cja-Mir-15-P2c  Cli-Mir-15-P2c  Cmi-Mir-15-P2c  Cpi-Mir-15-P2c  Cpo-Mir-15-P2c  Dno-Mir-15-P2c  Dre-Mir-15-P2c-v1  Dre-Mir-15-P2c-v2  Ete-Mir-15-P2c  Gga-Mir-15-P2c  Gja-Mir-15-P2c  Hsa-Mir-15-P2c  Laf-Mir-15-P2c  Lch-Mir-15-P2c  Loc-Mir-15-P2c  Mdo-Mir-15-P2c-v1  Mdo-Mir-15-P2c-v2  Mml-Mir-15-P2c  Mmr-Mir-15-P2c  Mmu-Mir-15-P2c  Mun-Mir-15-P2c  Neu-Mir-15-P2c-v1  Neu-Mir-15-P2c-v2  Oan-Mir-15-P2c  Ocu-Mir-15-P2c  Pab-Mir-15-P2c  Pbv-Mir-15-P2c  Rno-Mir-15-P2c3  Rno-Mir-15-P2c4  Sha-Mir-15-P2c-v1  Sha-Mir-15-P2c-v2  Spt-Mir-15-P2c  Tgu-Mir-15-P2c  Xla-Mir-15-P2c1  Xla-Mir-15-P2c2  Xtr-Mir-15-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009179.1: 111021117-111021179 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2c)		 Mir-450-P3 CM009179.1: 111015235-111015292 [-] UCSC Ensembl
Mir-450-P2 CM009179.1: 111015405-111015461 [-] UCSC Ensembl
Mir-450-P1 CM009179.1: 111015538-111015594 [-] UCSC Ensembl
Mir-542-v1 CM009179.1: 111016323-111016381 [-] UCSC Ensembl
Mir-15-P2c CM009179.1: 111021117-111021179 [-] UCSC Ensembl
Mir-15-P1c CM009179.1: 111021472-111021530 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGACGCGGUGCCCCGCACUCAGCCGUGCCCUAGCAGCGGGAACAGUACUGCAGUGGGCGAUCGGUGCUCUGGAGUAUUGUUCCUGCUGCCCGGGCAAGGCUGGGACUUCCGCACGGGCCCACC
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Structure
        10          20        30        40        50        60 
GGACGCGGUGCCCCGCA--|      G     UA                 G   UGGGCGA 
                   CUCAGCC UGCCC  GCAGCGGGAACAGUACU CAG       \
                   GGGUCGG ACGGG  CGUCGUCCUUGUUAUGA GUC       U
CCACCCGGGCACGCCUUCA^      A     CC                 G   UCGUGGC 
 120       110       100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-15-P2c_5p
mirBase accessionMIMAT0013227
Sequence 
0- UAGCAGCGGGAACAGUACUGCAG -23
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Star sequence

Eca-Mir-15-P2c_3p*
mirBase accessionNone
Sequence 
40- GGAGUAUUGUUCCUGCUGCCCGG -63
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