Mir-15-P2c

MirGeneDB ID

Eca-Mir-15-P2c

Family name

MIR-15 (all species)

Seed

AGCAGCG

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-503

Paralogues

Eca-Mir-15-P1a Eca-Mir-15-P1b Eca-Mir-15-P1c Eca-Mir-15-P1d Eca-Mir-15-P2a Eca-Mir-15-P2b Eca-Mir-15-P2d

Orthologues

Aca-Mir-15-P2c Ami-Mir-15-P2c Bta-Mir-15-P2c Cfa-Mir-15-P2c Cin-Mir-15-P2 Cja-Mir-15-P2c Cli-Mir-15-P2c Cmi-Mir-15-P2c Cpi-Mir-15-P2c Cpo-Mir-15-P2c Dno-Mir-15-P2c Dre-Mir-15-P2c-v1 Dre-Mir-15-P2c-v2 Ete-Mir-15-P2c Gga-Mir-15-P2c Gja-Mir-15-P2c Hsa-Mir-15-P2c Laf-Mir-15-P2c Lch-Mir-15-P2c Loc-Mir-15-P2c Mdo-Mir-15-P2c-v1 Mdo-Mir-15-P2c-v2 Mml-Mir-15-P2c Mmr-Mir-15-P2c Mmu-Mir-15-P2c Mun-Mir-15-P2c Neu-Mir-15-P2c-v1 Neu-Mir-15-P2c-v2 Oan-Mir-15-P2c Ocu-Mir-15-P2c Pab-Mir-15-P2c Pbv-Mir-15-P2c Rno-Mir-15-P2c3 Rno-Mir-15-P2c4 Sha-Mir-15-P2c-v1 Sha-Mir-15-P2c-v2 Spt-Mir-15-P2c Tgu-Mir-15-P2c Xla-Mir-15-P2c1 Xla-Mir-15-P2c2 Xtr-Mir-15-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 111021117-111021179 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2c)

Mir-450-P3 CM009179.1: 111015235-111015292 [-] UCSC Ensembl
Mir-450-P2 CM009179.1: 111015405-111015461 [-] UCSC Ensembl
Mir-450-P1 CM009179.1: 111015538-111015594 [-] UCSC Ensembl
Mir-542-v1 CM009179.1: 111016323-111016381 [-] UCSC Ensembl
Mir-15-P2c CM009179.1: 111021117-111021179 [-] UCSC Ensembl
Mir-15-P1c CM009179.1: 111021472-111021530 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGACGCGGUGCCCCGCACUCAGCCGUGCCCUAGCAGCGGGAACAGUACUGCAGUGGGCGAUCGGUGCUCUGGAGUAUUGUUCCUGCUGCCCGGGCAAGGCUGGGACUUCCGCACGGGCCCACC

Get precursor sequence

Structure

        10          20        30        40        50        60 
GGACGCGGUGCCCCGCA--|      G     UA                 G   UGGGCGA 
                   CUCAGCC UGCCC  GCAGCGGGAACAGUACU CAG       \
                   GGGUCGG ACGGG  CGUCGUCCUUGUUAUGA GUC       U
CCACCCGGGCACGCCUUCA^      A     CC                 G   UCGUGGC 
 120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Mature sequence

Eca-Mir-15-P2c_5p

mirBase accession

MIMAT0013227

Sequence

0- UAGCAGCGGGAACAGUACUGCAG -23

Get sequence

Star sequence

Eca-Mir-15-P2c_3p*

mirBase accession

None

Sequence

40- GGAGUAUUGUUCCUGCUGCCCGG -63

Get sequence