Mir-15-P2a

MirGeneDB ID

Eca-Mir-15-P2a

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-16-2

Paralogues

Eca-Mir-15-P1a Eca-Mir-15-P1b Eca-Mir-15-P1c Eca-Mir-15-P1d Eca-Mir-15-P2b Eca-Mir-15-P2c Eca-Mir-15-P2d

Orthologues

Ami-Mir-15-P2a Bta-Mir-15-P2a Cfa-Mir-15-P2a Cin-Mir-15-P2 Cja-Mir-15-P2a Cli-Mir-15-P2a Cmi-Mir-15-P2a Cpi-Mir-15-P2a Cpo-Mir-15-P2a Dno-Mir-15-P2a Dre-Mir-15-P2a1 Dre-Mir-15-P2a2 Ete-Mir-15-P2a Gga-Mir-15-P2a Gja-Mir-15-P2a Gmo-Mir-15-P2a2 Hsa-Mir-15-P2a Laf-Mir-15-P2a Lch-Mir-15-P2a Loc-Mir-15-P2a Mal-Mir-15-P2a2 Mdo-Mir-15-P2a Mml-Mir-15-P2a Mmr-Mir-15-P2a Mmu-Mir-15-P2a Mun-Mir-15-P2a Neu-Mir-15-P2a Oan-Mir-15-P2a Ocu-Mir-15-P2a Pab-Mir-15-P2a Pbv-Mir-15-P2a Rno-Mir-15-P2a Sha-Mir-15-P2a Spt-Mir-15-P2a Sto-Mir-15-P2a Tgu-Mir-15-P2a Tni-Mir-15-P2a2 Xla-Mir-15-P2a3 Xla-Mir-15-P2a4 Xtr-Mir-15-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_002863925.1_EquCab3.0)

CM009164.1: 21041912-21041976 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2a)

Mir-15-P1a CM009164.1: 21041772-21041830 [+] UCSC Ensembl
Mir-15-P2a CM009164.1: 21041912-21041976 [+] UCSC Ensembl
Mir-3613 CM009164.1: 21087975-21088033 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUCUUAUGACAGCAAUGUCAGCAGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUCUAAAAUUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGUUGGCCAUACUCAACAGUUAUAUU

Get precursor sequence

Structure

        10          20        30         40        50        60 
GCUCUUAUGACAGCAAU--      AG   C          -| A        CGUUAAGAUU 
                   GUCAGC  UGC UUAGCAGCAC GU AAUAUUGG          C
                   CGGUUG  AUG AGUCGUCGUG CA UUAUGACC          U
UUAUAUUGACAACUCAUAC      GA   A          U^ A        UCUAUUAAAA 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-15-P2a_5p

mirBase accession

MIMAT0012955

Sequence

0- UAGCAGCACGUAAAUAUUGGCG -22

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Star sequence

Eca-Mir-15-P2a_3p*

mirBase accession

None

Sequence

42- CCAGUAUUAACUGUGCUGCUGAA -65

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