Mir-15-P2a2

MirGeneDB ID

Mal-Mir-15-P2a2

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-15-P1a2 Mal-Mir-15-P1b Mal-Mir-15-P2b Mal-Mir-15-P2d

Orthologues

Ami-Mir-15-P2a Bta-Mir-15-P2a Cfa-Mir-15-P2a Cin-Mir-15-P2 Cja-Mir-15-P2a Cli-Mir-15-P2a Cmi-Mir-15-P2a Cpi-Mir-15-P2a Cpo-Mir-15-P2a Dno-Mir-15-P2a Dre-Mir-15-P2a2 Eca-Mir-15-P2a Ete-Mir-15-P2a Gga-Mir-15-P2a Gja-Mir-15-P2a Gmo-Mir-15-P2a2 Hsa-Mir-15-P2a Laf-Mir-15-P2a Lch-Mir-15-P2a Loc-Mir-15-P2a Mdo-Mir-15-P2a Mml-Mir-15-P2a Mmr-Mir-15-P2a Mmu-Mir-15-P2a Mun-Mir-15-P2a Neu-Mir-15-P2a Oan-Mir-15-P2a Ocu-Mir-15-P2a Pab-Mir-15-P2a Pbv-Mir-15-P2a Rno-Mir-15-P2a Sha-Mir-15-P2a Spt-Mir-15-P2a Sto-Mir-15-P2a Tgu-Mir-15-P2a Tni-Mir-15-P2a2 Xtr-Mir-15-P2a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Olfactores

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884787.1: 2303226-2303289 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGUUGUUCUCAUCUGCUGGUCACUUUACUGUAGCAGCACGUAAAUAUUGGAGUUAAGACUAAGUGAAGCCUCCAGUAUUGAUCGUGCUGCUGAAGCAAAGCUGACCACUCAGUCUUUGCAACUA

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Structure

        10         20         30        40         50        60 
AGUUGUUCUCAUCUGCU-     -    A  G          UA-|         UUAAGACU 
                  GGUCA CUUU CU UAGCAGCACG   AAUAUUGGAG        \
                  CCAGU GAAA GA GUCGUCGUGC   UUAUGACCUC        A
AUCAACGUUUCUGACUCA     C    C  A          UAG^         CGAAGUGA 
  120       110       100        90        80        70

Deep sequencing

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Comment

There is a second Dicer cut +1 on both arms.

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-15-P2a2_5p

mirBase accession

None

Sequence

0- UAGCAGCACGUAAAUAUUGGAG -22

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Star sequence

Mal-Mir-15-P2a2_3p*

mirBase accession

None

Sequence

41- CCAGUAUUGAUCGUGCUGCUGAA -64

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