MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-15-P2a

Family name MIR-15 (all species)
Seed CAAUAUU
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-15-P1a  Sto-Mir-15-P1b  Sto-Mir-15-P1d  Sto-Mir-15-P2b  Sto-Mir-15-P2d 
Orthologues Ami-Mir-15-P2a  Bta-Mir-15-P2a  Cfa-Mir-15-P2a  Cin-Mir-15-P2  Cja-Mir-15-P2a  Cli-Mir-15-P2a  Cmi-Mir-15-P2a  Cpi-Mir-15-P2a  Cpo-Mir-15-P2a  Dno-Mir-15-P2a  Dre-Mir-15-P2a1  Dre-Mir-15-P2a2  Eca-Mir-15-P2a  Ete-Mir-15-P2a  Gga-Mir-15-P2a  Gja-Mir-15-P2a  Gmo-Mir-15-P2a2  Hsa-Mir-15-P2a  Laf-Mir-15-P2a  Lch-Mir-15-P2a  Loc-Mir-15-P2a  Mal-Mir-15-P2a2  Mdo-Mir-15-P2a  Mml-Mir-15-P2a  Mmr-Mir-15-P2a  Mmu-Mir-15-P2a  Mun-Mir-15-P2a  Neu-Mir-15-P2a  Oan-Mir-15-P2a  Ocu-Mir-15-P2a  Pab-Mir-15-P2a  Pbv-Mir-15-P2a  Rno-Mir-15-P2a  Sha-Mir-15-P2a  Spt-Mir-15-P2a  Tgu-Mir-15-P2a  Tni-Mir-15-P2a2  Xla-Mir-15-P2a3  Xla-Mir-15-P2a4  Xtr-Mir-15-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_003427355_STO_add)		 BFAA01008186.1: 126338-126402 [+]
Precursor
(pre-Mir +30nt flank)
AAAUACAACAUUCUGAUGUCAGCAAUGCCUUAGCAGCAUGUAAAUAUUGGAGUUAAGCUCUUGUGAAAGUCCCCAAUAUUAAUUGUGCUGCUGGAGCAAGGCUGACUGCUUCUGCUGCUGCCAAA
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Structure
        10          20        30        40         50        60 
AAAUACAACAUUCUGAU--      AA   CU          UA-|       AGUUAAGCUC 
                   GUCAGC  UGC  UAGCAGCAUG   AAUAUUGG          U
                   CAGUCG  ACG  GUCGUCGUGU   UUAUAACC          U
AAACCGUCGUCGUCUUCGU      GA   AG          UAA^       CCUGAAAGUG 
   120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on the 3p arm.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Sto-Mir-15-P2a_5p*
mirBase accessionNone
Sequence 
0- UAGCAGCAUGUAAAUAUUGGAG -22
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Mature sequence

Sto-Mir-15-P2a_3p
mirBase accessionNone
Sequence 
42- CCAAUAUUAAUUGUGCUGCUGGA -65
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