Mir-15-P2a

MirGeneDB ID

Pbv-Mir-15-P2a

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Burmese python (Python bivittatus)

MiRBase ID

pbv-mir-16a

Paralogues

Pbv-Mir-15-P1b Pbv-Mir-15-P1c Pbv-Mir-15-P2b Pbv-Mir-15-P2c

Orthologues

Ami-Mir-15-P2a Bta-Mir-15-P2a Cfa-Mir-15-P2a Cin-Mir-15-P2 Cja-Mir-15-P2a Cli-Mir-15-P2a Cmi-Mir-15-P2a Cpi-Mir-15-P2a Cpo-Mir-15-P2a Dno-Mir-15-P2a Dre-Mir-15-P2a1 Dre-Mir-15-P2a2 Eca-Mir-15-P2a Ete-Mir-15-P2a Gga-Mir-15-P2a Gja-Mir-15-P2a Gmo-Mir-15-P2a2 Hsa-Mir-15-P2a Laf-Mir-15-P2a Lch-Mir-15-P2a Loc-Mir-15-P2a Mal-Mir-15-P2a2 Mdo-Mir-15-P2a Mml-Mir-15-P2a Mmr-Mir-15-P2a Mmu-Mir-15-P2a Mun-Mir-15-P2a Neu-Mir-15-P2a Oan-Mir-15-P2a Ocu-Mir-15-P2a Pab-Mir-15-P2a Rno-Mir-15-P2a Sha-Mir-15-P2a Spt-Mir-15-P2a Sto-Mir-15-P2a Tgu-Mir-15-P2a Tni-Mir-15-P2a2 Xla-Mir-15-P2a3 Xla-Mir-15-P2a4 Xtr-Mir-15-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_000186305.2_Python_molurus_bivittatus)

KE955268.1: 105233-105297 [+]

Precursor
(pre-Mir +30nt flank)

ACAUAUAUGGUUCUGGUGCCAGUUGUGCCUUAGCAGCACAUAAAUAUUGGAGUUAUUAUUAGUAAAGUAUCUCCAGUAUCAAUUGUGCUGCUGAAGUAAGGCUGUUCUUUUCUUCAGCAAGUCUC

Get precursor sequence

Structure

        10          20        30        40         50        60 
ACAUAUAUGGUUCUGGUGC--    UG   C           UAA-|        UUAUUAUU 
                     CAGU  UGC UUAGCAGCACA    AUAUUGGAG        A
                     GUCG  AUG AGUCGUCGUGU    UAUGACCUC        G
CUCUGAACGACUUCUUUUCUU    GA   A           UAAC^        UAUGAAAU 
   120       110       100        90        80        70

Deep sequencing

3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Pbv-Mir-15-P2a_5p (predicted)

mirBase accession

MIMAT0038833

Sequence

0- UAGCAGCACAUAAAUAUUGGAG -22

Get sequence

Star sequence

Pbv-Mir-15-P2a_3p* (predicted)

mirBase accession

None

Sequence

43- CAGUAUCAAUUGUGCUGCUGAA -65

Get sequence