MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-15-P2a

Family name MIR-15 (all species)
Seed AGCAGCA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-15-P1a  Lch-Mir-15-P1b  Lch-Mir-15-P1c  Lch-Mir-15-P2b  Lch-Mir-15-P2c 
Orthologues Ami-Mir-15-P2a  Bta-Mir-15-P2a  Cfa-Mir-15-P2a  Cin-Mir-15-P2  Cja-Mir-15-P2a  Cli-Mir-15-P2a  Cmi-Mir-15-P2a  Cpi-Mir-15-P2a  Cpo-Mir-15-P2a  Dno-Mir-15-P2a  Dre-Mir-15-P2a1  Dre-Mir-15-P2a2  Eca-Mir-15-P2a  Ete-Mir-15-P2a  Gga-Mir-15-P2a  Gja-Mir-15-P2a  Gmo-Mir-15-P2a2  Hsa-Mir-15-P2a  Laf-Mir-15-P2a  Loc-Mir-15-P2a  Mal-Mir-15-P2a2  Mdo-Mir-15-P2a  Mml-Mir-15-P2a  Mmr-Mir-15-P2a  Mmu-Mir-15-P2a  Mun-Mir-15-P2a  Neu-Mir-15-P2a  Oan-Mir-15-P2a  Ocu-Mir-15-P2a  Pab-Mir-15-P2a  Pbv-Mir-15-P2a  Rno-Mir-15-P2a  Sha-Mir-15-P2a  Spt-Mir-15-P2a  Sto-Mir-15-P2a  Tgu-Mir-15-P2a  Tni-Mir-15-P2a2  Xla-Mir-15-P2a3  Xla-Mir-15-P2a4  Xtr-Mir-15-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(LatCha1_add)		 JH127182.1: 910222-910287 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUCUGACAGAUGCUAAAGCCAGUGGUACCUUAGCAGCACGUAAAAUACUAGAGUUUAGUGUUUAUGAAUGCCUCCAGUAUUGGUCGUGCUGCUGAAGUAAGGCUGACACCUUUCUACGAAUGGUGG
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Structure
        10          20        30        40        50        60  
AUCUGACAGAUGCUAAAGC--|   GG   C           UAA      A  GUUUAGUGU 
                     CAGU  UAC UUAGCAGCACG   AAUACU GA         U
                     GUCG  AUG AGUCGUCGUGC   UUAUGA CU         U
GGUGGUAAGCAUCUUUCCACA^   GA   A           UGG      C  CCGUAAGUA 
    120       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Lch-Mir-15-P2a_5p (predicted)
mirBase accessionNone
Sequence 
0- UAGCAGCACGUAAAAUACUAGA -22
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Star sequence

Lch-Mir-15-P2a_3p* (predicted)
mirBase accessionNone
Sequence 
43- CCAGUAUUGGUCGUGCUGCUGAA -66
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