Mir-15-P2a3

MirGeneDB ID

Xla-Mir-15-P2a3

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-15-P1a3 Xla-Mir-15-P1a4 Xla-Mir-15-P1b1 Xla-Mir-15-P1b2 Xla-Mir-15-P1c1 Xla-Mir-15-P1c2 Xla-Mir-15-P2a4 Xla-Mir-15-P2b1 Xla-Mir-15-P2b2 Xla-Mir-15-P2c1 Xla-Mir-15-P2c2

Orthologues

Ami-Mir-15-P2a Bta-Mir-15-P2a Cfa-Mir-15-P2a Cin-Mir-15-P2 Cja-Mir-15-P2a Cli-Mir-15-P2a Cmi-Mir-15-P2a Cpi-Mir-15-P2a Cpo-Mir-15-P2a Dno-Mir-15-P2a Eca-Mir-15-P2a Ete-Mir-15-P2a Gga-Mir-15-P2a Gja-Mir-15-P2a Hsa-Mir-15-P2a Laf-Mir-15-P2a Lch-Mir-15-P2a Loc-Mir-15-P2a Mdo-Mir-15-P2a Mml-Mir-15-P2a Mmr-Mir-15-P2a Mmu-Mir-15-P2a Mun-Mir-15-P2a Neu-Mir-15-P2a Oan-Mir-15-P2a Ocu-Mir-15-P2a Pab-Mir-15-P2a Pbv-Mir-15-P2a Rno-Mir-15-P2a Sha-Mir-15-P2a Spt-Mir-15-P2a Sto-Mir-15-P2a Tgu-Mir-15-P2a Xtr-Mir-15-P2a

Node of Origin (locus)

X. laevis

Node of Origin (family)

Olfactores

Genome context
(GCF_001663975.1_XLA_v2)

NC_030726.1: 152015965-152016020 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUGAUCUGUGUGCUCUUACCAGCUGUCCUUUAGCAGCACGUAAAUGUUGGAGUUAAAAUGGUCCCAAUAUUAUCUGUGCUGCUAGAGUAAAACUGGCCCGUCUCAACAAUCAGAAC

Get precursor sequence

Structure

        10          20        30        40         50       
AUGAUCUGUGUGCUCUUA--    CUGUC             UA-|       AGUUAA 
                    CCAG     CUUUAGCAGCACG   AAUGUUGG      \
                    GGUC     GAGAUCGUCGUGU   UUAUAACC      A
CAAGACUAACAACUCUGCCC    AAAAU             CUA^       CUGGUA 
    110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em

Mature sequence

Xla-Mir-15-P2a3_5p

mirBase accession

None

Sequence

0- UAGCAGCACGUAAAUGUUGGA -21

Get sequence

Star sequence

Xla-Mir-15-P2a3_3p*

mirBase accession

None

Sequence

34- CAAUAUUAUCUGUGCUGCUAGA -56

Get sequence