Mir-15-P2b1

MirGeneDB ID

Xla-Mir-15-P2b1

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-16b

Paralogues

Xla-Mir-15-P1a3 Xla-Mir-15-P1a4 Xla-Mir-15-P1b1 Xla-Mir-15-P1b2 Xla-Mir-15-P1c1 Xla-Mir-15-P1c2 Xla-Mir-15-P2a3 Xla-Mir-15-P2a4 Xla-Mir-15-P2b2 Xla-Mir-15-P2c1 Xla-Mir-15-P2c2

Orthologues

Aca-Mir-15-P2b Ami-Mir-15-P2b Bta-Mir-15-P2b Cfa-Mir-15-P2b Cin-Mir-15-P2 Cja-Mir-15-P2b Cli-Mir-15-P2b Cmi-Mir-15-P2b Cpi-Mir-15-P2b Cpo-Mir-15-P2b Dno-Mir-15-P2b Dre-Mir-15-P2b Eca-Mir-15-P2b Ete-Mir-15-P2b Gga-Mir-15-P2b Gja-Mir-15-P2b Gmo-Mir-15-P2b Hsa-Mir-15-P2b Laf-Mir-15-P2b Lch-Mir-15-P2b Loc-Mir-15-P2b Mal-Mir-15-P2b Mdo-Mir-15-P2b Mml-Mir-15-P2b Mmr-Mir-15-P2b Mmu-Mir-15-P2b Mun-Mir-15-P2b Neu-Mir-15-P2b Oan-Mir-15-P2b Ocu-Mir-15-P2b Pab-Mir-15-P2b Pbv-Mir-15-P2b Rno-Mir-15-P2b Sha-Mir-15-P2b Spt-Mir-15-P2b Sto-Mir-15-P2b Tgu-Mir-15-P2b Tni-Mir-15-P2b Xtr-Mir-15-P2b

Node of Origin (locus)

X. laevis

Node of Origin (family)

Olfactores

Genome context
(GCF_001663975.1_XLA_v2)

NC_030732.1: 111710605-111710664 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUCGCUCCGUUAAUCUAUUUGCUCCGCAUUAGCAGCACGUAAAUAUUGGGUGAUAUGAUAUGGAGCCCCAGUAUUAUUGUGCUGCUUAAGUGUGGCAAAGAUCUGCACCAGUUUUCUGA

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Structure

        10          20        30        40        50         
CCUCGCUCCGUUAAUCUA--|    UC   AUU         UA         UGAUAUG 
                    UUUGC  CGC   AGCAGCACG  AAUAUUGGG       A
                    AAACG  GUG   UCGUCGUGU  UUAUGACCC       U
AGUCUUUUGACCACGUCUAG^    GU   AAU         UA         CGAGGUA 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Em

Mature sequence

Xla-Mir-15-P2b1_5p

mirBase accession

MIMAT0046476

Sequence

0- UAGCAGCACGUAAAUAUUGGGU -22

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Star sequence

Xla-Mir-15-P2b1_3p* (predicted)

mirBase accession

MIMAT0046477

Sequence

37- CCCAGUAUUAUUGUGCUGCUUAA -60

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