Mir-15-P2b

MirGeneDB ID

Cpi-Mir-15-P2b

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Western painted turtle (Chrysemys picta bellii)

MiRBase ID

Paralogues

Cpi-Mir-15-P1a Cpi-Mir-15-P1b Cpi-Mir-15-P1c Cpi-Mir-15-P2a Cpi-Mir-15-P2c

Orthologues

Aca-Mir-15-P2b Ami-Mir-15-P2b Bta-Mir-15-P2b Cfa-Mir-15-P2b Cin-Mir-15-P2 Cja-Mir-15-P2b Cli-Mir-15-P2b Cmi-Mir-15-P2b Cpo-Mir-15-P2b Dno-Mir-15-P2b Dre-Mir-15-P2b Eca-Mir-15-P2b Ete-Mir-15-P2b Gga-Mir-15-P2b Gja-Mir-15-P2b Gmo-Mir-15-P2b Hsa-Mir-15-P2b Laf-Mir-15-P2b Lch-Mir-15-P2b Loc-Mir-15-P2b Mal-Mir-15-P2b Mdo-Mir-15-P2b Mml-Mir-15-P2b Mmr-Mir-15-P2b Mmu-Mir-15-P2b Mun-Mir-15-P2b Neu-Mir-15-P2b Oan-Mir-15-P2b Ocu-Mir-15-P2b Pab-Mir-15-P2b Pbv-Mir-15-P2b Rno-Mir-15-P2b Sha-Mir-15-P2b Spt-Mir-15-P2b Sto-Mir-15-P2b Tgu-Mir-15-P2b Tni-Mir-15-P2b Xla-Mir-15-P2b1 Xla-Mir-15-P2b2 Xtr-Mir-15-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(chrPic1)

JH584696: 121998-122062 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUGAAUAGAAUUGCUAUACUCGUUCCGCCCUAGCAGCACGUAAAUAUUGGUGUAGUAAAGUAAAUCUUAAACCCCAAUAUUAUUGUGCUGCUUAAGCGUGGCAGAGAUUCAGCAACUUGUUUAUC

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Structure

        10         20         30        40        50        60  
AUGAAUAGAAUUGCUAUA-   -| UC   CCU         UA        U  AGUAAAGU 
                   CUC GU  CGC   AGCAGCACG  AAUAUUGG GU        \
                   GAG CG  GCG   UCGUCGUGU  UUAUAACC CA        A
CUAUUUGUUCAACGACUUA   A^ GU   AAU         UA        C  AAUUCUAA 
   120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Te	Te	Te	To

Mature sequence

Cpi-Mir-15-P2b_5p

mirBase accession

None

Sequence

0- UAGCAGCACGUAAAUAUUGGUGU -23

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Star sequence

Cpi-Mir-15-P2b_3p*

mirBase accession

None

Sequence

42- CCCAAUAUUAUUGUGCUGCUUAA -65

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