MirGeneDB ID | Laf-Mir-15-P2b |
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Family name | MIR-15 (all species) |
Seed | AGCAGCA |
Species | African bush elephant (Loxodonta africana) |
MiRBase ID | |
Paralogues | Laf-Mir-15-P1a Laf-Mir-15-P1b Laf-Mir-15-P1c Laf-Mir-15-P1d Laf-Mir-15-P2a Laf-Mir-15-P2c Laf-Mir-15-P2d |
Orthologues | Aca-Mir-15-P2b Ami-Mir-15-P2b Bta-Mir-15-P2b Cfa-Mir-15-P2b Cin-Mir-15-P2 Cja-Mir-15-P2b Cli-Mir-15-P2b Cmi-Mir-15-P2b Cpi-Mir-15-P2b Cpo-Mir-15-P2b Dno-Mir-15-P2b Dre-Mir-15-P2b Eca-Mir-15-P2b Ete-Mir-15-P2b Gga-Mir-15-P2b Gja-Mir-15-P2b Gmo-Mir-15-P2b Hsa-Mir-15-P2b Lch-Mir-15-P2b Loc-Mir-15-P2b Mal-Mir-15-P2b Mdo-Mir-15-P2b Mml-Mir-15-P2b Mmr-Mir-15-P2b Mmu-Mir-15-P2b Mun-Mir-15-P2b Neu-Mir-15-P2b Oan-Mir-15-P2b Ocu-Mir-15-P2b Pab-Mir-15-P2b Pbv-Mir-15-P2b Rno-Mir-15-P2b Sha-Mir-15-P2b Spt-Mir-15-P2b Sto-Mir-15-P2b Tgu-Mir-15-P2b Tni-Mir-15-P2b Xla-Mir-15-P2b1 Xla-Mir-15-P2b2 Xtr-Mir-15-P2b |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Olfactores |
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010068.1: 315167-315231 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UUUGGAUGGACUGACAUGCUUGUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAGUAAAUAUUAGACCCCAAUAUUAUUGUGCUGCUUUAGUGUGACAGGGAUACAGCAUCUAUUUACCAGet precursor sequence |
Structure | 10 20 30 40 50 60 UUUGGAUGGACUGACAUG--| UC CU UA C AGUGAAGU CUUGU CACU AGCAGCACG AAUAUUGG GU \ GGACA GUGA UCGUCGUGU UUAUAACC CA A ACCAUUUAUCUACGACAUAG^ GU UU UA C GAUUAUAA 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Mature sequence | Laf-Mir-15-P2b_5p |
mirBase accession | None |
Sequence |
0- UAGCAGCACGUAAAUAUUGGCGU -23
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|
Star sequence | Laf-Mir-15-P2b_3p* |
mirBase accession | None |
Sequence |
42- CCCAAUAUUAUUGUGCUGCUUUA -65
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