Mir-15-P2b

MirGeneDB ID

Eca-Mir-15-P2b

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-16-1

Paralogues

Eca-Mir-15-P1a Eca-Mir-15-P1b Eca-Mir-15-P1c Eca-Mir-15-P1d Eca-Mir-15-P2a Eca-Mir-15-P2c Eca-Mir-15-P2d

Orthologues

Aca-Mir-15-P2b Ami-Mir-15-P2b Bta-Mir-15-P2b Cfa-Mir-15-P2b Cin-Mir-15-P2 Cja-Mir-15-P2b Cli-Mir-15-P2b Cmi-Mir-15-P2b Cpi-Mir-15-P2b Cpo-Mir-15-P2b Dno-Mir-15-P2b Dre-Mir-15-P2b Ete-Mir-15-P2b Gga-Mir-15-P2b Gja-Mir-15-P2b Gmo-Mir-15-P2b Hsa-Mir-15-P2b Laf-Mir-15-P2b Lch-Mir-15-P2b Loc-Mir-15-P2b Mal-Mir-15-P2b Mdo-Mir-15-P2b Mml-Mir-15-P2b Mmr-Mir-15-P2b Mmu-Mir-15-P2b Mun-Mir-15-P2b Neu-Mir-15-P2b Oan-Mir-15-P2b Ocu-Mir-15-P2b Pab-Mir-15-P2b Pbv-Mir-15-P2b Rno-Mir-15-P2b Sha-Mir-15-P2b Spt-Mir-15-P2b Sto-Mir-15-P2b Tgu-Mir-15-P2b Tni-Mir-15-P2b Xla-Mir-15-P2b1 Xla-Mir-15-P2b2 Xtr-Mir-15-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_002863925.1_EquCab3.0)

CM009166.1: 3407870-3407934 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2b)

Mir-15-P2b CM009166.1: 3407870-3407934 [-] UCSC Ensembl
Mir-15-P1b CM009166.1: 3408022-3408081 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUGGAUGGACUGACAUACUUGUUCCGCUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAAAUAUUAAACACCAAUAUUAUUGUGCUGCUUUAGCGUGGCAGGGAUACAGCAACUAUUUAUGA

Get precursor sequence

Structure

        10          20        30        40        50        60  
UUUGGAUGGACUGACAUA--|    UC    CU         UA        C  AGUGAAAU 
                    CUUGU  CGCU  AGCAGCACG  AAUAUUGG GU        \
                    GGACG  GCGA  UCGUCGUGU  UUAUAACC CA        A
AGUAUUUAUCAACGACAUAG^    GU    UU         UA        A  AAUUAUAA 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Mature sequence

Eca-Mir-15-P2b_5p

mirBase accession

MIMAT0012955

Sequence

0- UAGCAGCACGUAAAUAUUGGCGU -23

Get sequence

Star sequence

Eca-Mir-15-P2b_3p*

mirBase accession

None

Sequence

42- ACCAAUAUUAUUGUGCUGCUUUA -65

Get sequence