Mir-15-P2b

MirGeneDB ID

Eca-Mir-15-P2b

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-16-1

Paralogues

Eca-Mir-15-P1a Eca-Mir-15-P1b Eca-Mir-15-P1c Eca-Mir-15-P1d Eca-Mir-15-P2a Eca-Mir-15-P2c Eca-Mir-15-P2d

Orthologues

Aca-Mir-15-P2b Ami-Mir-15-P2b Bta-Mir-15-P2b Cfa-Mir-15-P2b Cin-Mir-15-P2 Cja-Mir-15-P2b Cli-Mir-15-P2b Cmi-Mir-15-P2b Cpi-Mir-15-P2b Cpo-Mir-15-P2b Dno-Mir-15-P2b Dre-Mir-15-P2b Ete-Mir-15-P2b Gga-Mir-15-P2b Gja-Mir-15-P2b Gmo-Mir-15-P2b Hsa-Mir-15-P2b Laf-Mir-15-P2b Lch-Mir-15-P2b Loc-Mir-15-P2b Mal-Mir-15-P2b Mdo-Mir-15-P2b Mml-Mir-15-P2b Mmr-Mir-15-P2b Mmu-Mir-15-P2b Mun-Mir-15-P2b Neu-Mir-15-P2b Oan-Mir-15-P2b Ocu-Mir-15-P2b Pab-Mir-15-P2b Pbv-Mir-15-P2b Rno-Mir-15-P2b Sha-Mir-15-P2b Spt-Mir-15-P2b Sto-Mir-15-P2b Tgu-Mir-15-P2b Tni-Mir-15-P2b Xla-Mir-15-P2b1 Xla-Mir-15-P2b2 Xtr-Mir-15-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_002863925.1_EquCab3.0)

CM009166.1: 3407870-3407934 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2b)

Mir-15-P2b CM009166.1: 3407870-3407934 [-] UCSC Ensembl
Mir-15-P1b CM009166.1: 3408022-3408081 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUGGAUGGACUGACAUACUUGUUCCGCUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAAAUAUUAAACACCAAUAUUAUUGUGCUGCUUUAGCGUGGCAGGGAUACAGCAACUAUUUAUGA

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Structure

        10          20        30        40        50        60  
UUUGGAUGGACUGACAUA--|    UC    CU         UA        C  AGUGAAAU 
                    CUUGU  CGCU  AGCAGCACG  AAUAUUGG GU        \
                    GGACG  GCGA  UCGUCGUGU  UUAUAACC CA        A
AGUAUUUAUCAACGACAUAG^    GU    UU         UA        A  AAUUAUAA 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-15-P2b_5p

mirBase accession

MIMAT0012955

Sequence

0- UAGCAGCACGUAAAUAUUGGCGU -23

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Star sequence

Eca-Mir-15-P2b_3p*

mirBase accession

None

Sequence

42- ACCAAUAUUAUUGUGCUGCUUUA -65

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