Mir-15-P2b

MirGeneDB ID

Tni-Mir-15-P2b

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

Paralogues

Tni-Mir-15-P1a2 Tni-Mir-15-P1b Tni-Mir-15-P2a2

Orthologues

Aca-Mir-15-P2b Ami-Mir-15-P2b Bta-Mir-15-P2b Cfa-Mir-15-P2b Cin-Mir-15-P2 Cja-Mir-15-P2b Cli-Mir-15-P2b Cmi-Mir-15-P2b Cpi-Mir-15-P2b Cpo-Mir-15-P2b Dno-Mir-15-P2b Dre-Mir-15-P2b Eca-Mir-15-P2b Ete-Mir-15-P2b Gga-Mir-15-P2b Gja-Mir-15-P2b Gmo-Mir-15-P2b Hsa-Mir-15-P2b Laf-Mir-15-P2b Lch-Mir-15-P2b Loc-Mir-15-P2b Mal-Mir-15-P2b Mdo-Mir-15-P2b Mml-Mir-15-P2b Mmr-Mir-15-P2b Mmu-Mir-15-P2b Mun-Mir-15-P2b Neu-Mir-15-P2b Oan-Mir-15-P2b Ocu-Mir-15-P2b Pab-Mir-15-P2b Pbv-Mir-15-P2b Rno-Mir-15-P2b Sha-Mir-15-P2b Spt-Mir-15-P2b Sto-Mir-15-P2b Tgu-Mir-15-P2b Xla-Mir-15-P2b1 Xla-Mir-15-P2b2 Xtr-Mir-15-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

16: 2089596-2089660 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCUCCUCCUCUCGCGUACCUGCCACGCUUUAGCAGCACGUAAAUAUUGGCGUGUAAAAUCAGAAAUCAACCCCAAUAUUAGCAGUGCUGCUUCACUGUGGCUGGAACCAACACCUUCAUUCUCC

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Structure

        10          20        30         40        50        60 
CUCUCCUCCUCUCGCGUA--  U      CUUU        -| A        C  GUAAAAU 
                    CC GCCACG    AGCAGCAC GU AAUAUUGG GU       C
                    GG CGGUGU    UCGUCGUG CG UUAUAACC CA       A
CCUCUUACUUCCACAACCAA  U      CACU        A^ A        C  ACUAAAG 
   120       110       100        90        80        70

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-15-P2b_5p

mirBase accession

None

Sequence

0- UAGCAGCACGUAAAUAUUGGCGU -23

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Star sequence

Tni-Mir-15-P2b_3p*

mirBase accession

None

Sequence

41- CCCAAUAUUAGCAGUGCUGCUUCA -65

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