Mir-15-P1a2

MirGeneDB ID

Tni-Mir-15-P1a2

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-15a

Paralogues

Tni-Mir-15-P1b Tni-Mir-15-P2a2 Tni-Mir-15-P2b

Orthologues

Ami-Mir-15-P1a Bta-Mir-15-P1a Cfa-Mir-15-P1a Cin-Mir-15-P1 Cja-Mir-15-P1a Cli-Mir-15-P1a Cmi-Mir-15-P1a Cpi-Mir-15-P1a Cpo-Mir-15-P1a Dno-Mir-15-P1a Dre-Mir-15-P1a2 Eca-Mir-15-P1a Ete-Mir-15-P1a Gga-Mir-15-P1a Gja-Mir-15-P1a Gmo-Mir-15-P1a2 Hsa-Mir-15-P1a Laf-Mir-15-P1a Lch-Mir-15-P1a Loc-Mir-15-P1a Mal-Mir-15-P1a2 Mdo-Mir-15-P1a Mml-Mir-15-P1a Mmr-Mir-15-P1a Mmu-Mir-15-P1a Mun-Mir-15-P1a Neu-Mir-15-P1a Oan-Mir-15-P1a Ocu-Mir-15-P1a Pab-Mir-15-P1a Rno-Mir-15-P1a Sha-Mir-15-P1a Spt-Mir-15-P1a Sto-Mir-15-P1a Tgu-Mir-15-P1a Xtr-Mir-15-P1a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Olfactores

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

2: 11019294-11019352 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1a2)

Mir-15-P1a2 2: 11019294-11019352 [+] UCSC Ensembl
Mir-15-P2a2 2: 11019481-11019546 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUCCGUCACGAGCAGUUCUGGUGAUGCUGUAGCAGCACGGAAUGGUUUGUGAGUUACACUGAGAUACAAGCCAUGCUGUGCUGCCGCAGGACAGCCCGAGAGUGCAGCCUGACCGCCU

Get precursor sequence

Structure

        10          20        30        40        50         
CCUCCGUCACGAGCAGU--| U   GAUG   UA         A          AGUUAC 
                   UC GGU    CUG  GCAGCACGG AUGGUUUGUG      \
                   AG CCG    GAC  CGUCGUGUC UACCGAACAU      A
UCCGCCAGUCCGACGUGAG^ C   ACAG   GC         G          AGAGUC 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-15-P1a2_5p

mirBase accession

MIMAT0003106

Sequence

0- UAGCAGCACGGAAUGGUUUGUG -22

Get sequence

Star sequence

Tni-Mir-15-P1a2_3p*

mirBase accession

None

Sequence

37- CAAGCCAUGCUGUGCUGCCGCA -59

Get sequence