MirGeneDB ID | Sto-Mir-15-P1a |
Family name |
MIR-15 (all species) |
Seed |
AGCAGCA |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
Sto-Mir-15-P1b
Sto-Mir-15-P1d
Sto-Mir-15-P2a
Sto-Mir-15-P2b
Sto-Mir-15-P2d
|
Orthologues |
Ami-Mir-15-P1a
Bta-Mir-15-P1a
Cfa-Mir-15-P1a
Cin-Mir-15-P1
Cja-Mir-15-P1a
Cli-Mir-15-P1a
Cmi-Mir-15-P1a
Cpi-Mir-15-P1a
Cpo-Mir-15-P1a
Dno-Mir-15-P1a
Dre-Mir-15-P1a1
Dre-Mir-15-P1a2
Eca-Mir-15-P1a
Ete-Mir-15-P1a
Gga-Mir-15-P1a
Gja-Mir-15-P1a
Gmo-Mir-15-P1a2
Hsa-Mir-15-P1a
Laf-Mir-15-P1a
Lch-Mir-15-P1a
Loc-Mir-15-P1a
Mal-Mir-15-P1a2
Mdo-Mir-15-P1a
Mml-Mir-15-P1a
Mmr-Mir-15-P1a
Mmu-Mir-15-P1a
Mun-Mir-15-P1a
Neu-Mir-15-P1a
Oan-Mir-15-P1a
Ocu-Mir-15-P1a
Pab-Mir-15-P1a
Rno-Mir-15-P1a
Sha-Mir-15-P1a
Spt-Mir-15-P1a
Tgu-Mir-15-P1a
Tni-Mir-15-P1a2
Xla-Mir-15-P1a3
Xla-Mir-15-P1a4
Xtr-Mir-15-P1a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Olfactores
|
Genome context (GCA_003427355_STO_add) |
BFAA01008186.1: 126152-126210 [+]
|
Precursor (pre-Mir +30nt flank) |
AAAAUCCAAUGUGGAGAUCCUGUGGUGAACUAGCAGCACAUAAUGGUUUGUGAGUUGUACGGAGAUGCAGGCCACAUUGUGCUGCCACAUGAACACAGGAGUAUAAUCUGAUUUCACUA
Get precursor sequence
|
Structure | 10 20 30 40 50
AAAAUCCAAUGUGGAGA--| GUGAACUA UAA GAGUUGU
UCCUGUG GCAGCACA UGGUUUGU \
AGGACAC CGUCGUGU ACCGGACG A
AUCACUUUAGUCUAAUAUG^ AAGUACAC UAC UAGAGGC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut +1 on both arms. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Sto-Mir-15-P1a_5p |
mirBase accession | None |
Sequence |
0- UAGCAGCACAUAAUGGUUUGUG -22
Get sequence
|
Star sequence |
Sto-Mir-15-P1a_3p* |
mirBase accession | None |
Sequence |
37- CAGGCCACAUUGUGCUGCCACA -59
Get sequence
|