Mir-15-P1a4

MirGeneDB ID

Xla-Mir-15-P1a4

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-15a

Paralogues

Xla-Mir-15-P1a3 Xla-Mir-15-P1b1 Xla-Mir-15-P1b2 Xla-Mir-15-P1c1 Xla-Mir-15-P1c2 Xla-Mir-15-P2a3 Xla-Mir-15-P2a4 Xla-Mir-15-P2b1 Xla-Mir-15-P2b2 Xla-Mir-15-P2c1 Xla-Mir-15-P2c2

Orthologues

Ami-Mir-15-P1a Bta-Mir-15-P1a Cfa-Mir-15-P1a Cin-Mir-15-P1 Cja-Mir-15-P1a Cli-Mir-15-P1a Cmi-Mir-15-P1a Cpi-Mir-15-P1a Cpo-Mir-15-P1a Dno-Mir-15-P1a Eca-Mir-15-P1a Ete-Mir-15-P1a Gga-Mir-15-P1a Gja-Mir-15-P1a Hsa-Mir-15-P1a Laf-Mir-15-P1a Lch-Mir-15-P1a Loc-Mir-15-P1a Mdo-Mir-15-P1a Mml-Mir-15-P1a Mmr-Mir-15-P1a Mmu-Mir-15-P1a Mun-Mir-15-P1a Neu-Mir-15-P1a Oan-Mir-15-P1a Ocu-Mir-15-P1a Pab-Mir-15-P1a Rno-Mir-15-P1a Sha-Mir-15-P1a Spt-Mir-15-P1a Sto-Mir-15-P1a Tgu-Mir-15-P1a Xtr-Mir-15-P1a

Node of Origin (locus)

X. laevis

Node of Origin (family)

Olfactores

Genome context
(GCF_001663975.1_XLA_v2)

NC_030727.1: 132173099-132173157 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACAAUGUGGUUAAAUGACCUUGAAGUAAAGUAGCAGCACAUAAUGGUUUGUGGGUUACACAGAGGUGCAGGCCAUACUGUGCUGCCGCCAAAACACAAGGCUUUCCUCCCCUCAAGUGG

Get precursor sequence

Structure

        10          20        30        40        50         
ACAAUGUGGUUAAAUGA--|    AAGUAAA UA        UA         GGGUUAC 
                   CCUUG       G  GCAGCACA  AUGGUUUGU       \
                   GGAAC       C  CGUCGUGU  UACCGGACG       A
GGUGAACUCCCCUCCUUUC^    ACAAAAC GC        CA         UGGAGAC 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em

Mature sequence

Xla-Mir-15-P1a4_5p

mirBase accession

MIMAT0046470

Sequence

0- UAGCAGCACAUAAUGGUUUGUG -22

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Star sequence

Xla-Mir-15-P1a4_3p*

mirBase accession

MIMAT0046471

Sequence

37- CAGGCCAUACUGUGCUGCCGCC -59

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