Mir-15-P1a

MirGeneDB ID

Dno-Mir-15-P1a

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Nine-banded armadillo (Dasypus novemcinctus)

MiRBase ID

dno-mir-15a

Paralogues

Dno-Mir-15-P1b Dno-Mir-15-P1c Dno-Mir-15-P1d Dno-Mir-15-P2a Dno-Mir-15-P2b Dno-Mir-15-P2c Dno-Mir-15-P2d

Orthologues

Ami-Mir-15-P1a Bta-Mir-15-P1a Cfa-Mir-15-P1a Cin-Mir-15-P1 Cja-Mir-15-P1a Cli-Mir-15-P1a Cmi-Mir-15-P1a Cpi-Mir-15-P1a Cpo-Mir-15-P1a Dre-Mir-15-P1a1 Dre-Mir-15-P1a2 Eca-Mir-15-P1a Ete-Mir-15-P1a Gga-Mir-15-P1a Gja-Mir-15-P1a Gmo-Mir-15-P1a2 Hsa-Mir-15-P1a Laf-Mir-15-P1a Lch-Mir-15-P1a Loc-Mir-15-P1a Mal-Mir-15-P1a2 Mdo-Mir-15-P1a Mml-Mir-15-P1a Mmr-Mir-15-P1a Mmu-Mir-15-P1a Mun-Mir-15-P1a Neu-Mir-15-P1a Oan-Mir-15-P1a Ocu-Mir-15-P1a Pab-Mir-15-P1a Rno-Mir-15-P1a Sha-Mir-15-P1a Spt-Mir-15-P1a Sto-Mir-15-P1a Tgu-Mir-15-P1a Tni-Mir-15-P1a2 Xla-Mir-15-P1a3 Xla-Mir-15-P1a4 Xtr-Mir-15-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(dasNov3)

JH570793: 729493-729551 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1a)

Mir-3613 JH570793: 688270-688328 [-] UCSC Ensembl
Mir-15-P2a JH570793: 729350-729414 [-] UCSC Ensembl
Mir-15-P1a JH570793: 729493-729551 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAUUUUAAAAAAAAAAACCUUGGAGUAAAGUAGCAGCACAUAAUGGUUUGUGGAUUUUGAAAAGGUGCAGGCCAUAUUGUGCUGCCUCAAAAAUACAAGGAUCUGAUCUUCUGAAAAGA

Get precursor sequence

Structure

        10          20        30        40        50         
UAUUUUAAAAAAAAAAA--|    GAGUAAAGUA        UA         GGAUUUU 
                   CCUUG          GCAGCACA  AUGGUUUGU       \
                   GGAAC          CGUCGUGU  UACCGGACG       G
AGAAAAGUCUUCUAGUCUA^    AUAAAAACUC        UA         UGGAAAA 
       110       100        90        80        70        60