Mir-15-P1d

MirGeneDB ID

Sto-Mir-15-P1d

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-15-P1a Sto-Mir-15-P1b Sto-Mir-15-P2a Sto-Mir-15-P2b Sto-Mir-15-P2d

Orthologues

Ami-Mir-15-P1d Bta-Mir-15-P1d Cfa-Mir-15-P1d Cin-Mir-15-P1 Cja-Mir-15-P1d Cpo-Mir-15-P1d Dno-Mir-15-P1d Dre-Mir-15-P1d Eca-Mir-15-P1d Ete-Mir-15-P1d Hsa-Mir-15-P1d Laf-Mir-15-P1d Loc-Mir-15-P1d Mdo-Mir-15-P1d Mml-Mir-15-P1d Mmr-Mir-15-P1d Mmu-Mir-15-P1d Neu-Mir-15-P1d Oan-Mir-15-P1d Ocu-Mir-15-P1d Pab-Mir-15-P1d Rno-Mir-15-P1d Sha-Mir-15-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_003427355_STO_add)

BFAA01004470.1: 237392-237448 [+]

Precursor
(pre-Mir +30nt flank)

ACCUUCCUCCCAAAACACCUGCAUUCAGCACAGCAGCACACCAUGGUUUGCAUGUAUUGAAUAUCCAAACCGUUGUGUGCUGUUCUGGGGAGUGUGGGGAAUUCUGUCUGGUAGUGG

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Structure

        10          20        30        40        50        
ACCUUCCUCCCAAAACA--| UG     AG  C          C        CAUGUAU 
                   CC  CAUUC  CA AGCAGCACAC AUGGUUUG       \
                   GG  GUGAG  GU UUGUCGUGUG UGCCAAAC       U
GGUGAUGGUCUGUCUUAAG^ GU     GG  C          U        CUAUAAG 
     110       100        90        80        70        60

Deep sequencing

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Comment

There is a second Dicer cut +1 on the 3p arm.

3' NTU

Motifs

UGUG in loop

Tissue expression

To

Mature sequence

Sto-Mir-15-P1d_5p

mirBase accession

None

Sequence

0- CAGCAGCACACCAUGGUUUGCA -22

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Star sequence

Sto-Mir-15-P1d_3p*

mirBase accession

None

Sequence

35- CAAACCGUUGUGUGCUGUUCUG -57

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