Mir-15-P1d

MirGeneDB ID

Rno-Mir-15-P1d

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-497

Paralogues

Rno-Mir-15-P1a Rno-Mir-15-P1b Rno-Mir-15-P1c3 Rno-Mir-15-P1c4 Rno-Mir-15-P2a Rno-Mir-15-P2b Rno-Mir-15-P2c3 Rno-Mir-15-P2c4 Rno-Mir-15-P2d

Orthologues

Ami-Mir-15-P1d Bta-Mir-15-P1d Cfa-Mir-15-P1d Cin-Mir-15-P1 Cja-Mir-15-P1d Cpo-Mir-15-P1d Dno-Mir-15-P1d Dre-Mir-15-P1d Eca-Mir-15-P1d Ete-Mir-15-P1d Hsa-Mir-15-P1d Laf-Mir-15-P1d Loc-Mir-15-P1d Mdo-Mir-15-P1d Mml-Mir-15-P1d Mmr-Mir-15-P1d Mmu-Mir-15-P1d Neu-Mir-15-P1d Oan-Mir-15-P1d Ocu-Mir-15-P1d Pab-Mir-15-P1d Sha-Mir-15-P1d Sto-Mir-15-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(rn6)

chr10: 56844978-56845039 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1d)

Mir-15-P1d chr10: 56844978-56845039 [+] UCSC Ensembl
Mir-15-P2d chr10: 56845315-56845375 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCUCGACACACCCCAGUCCUGCUCCCGCCCCAGCAGCACACUGUGGUUUGUACGGCACUGUGGCCACGUCCAAACCACACUGUGGUGUUAGAGCGAGGGUAUGGGAGGCACCGCUGAGGCCU

Get precursor sequence

Structure

        10          20        30        40        50        60
UCUCGACACACCCCAGU-  -|    C   CCC    G    C         UACGGCACU 
                  CC UGCUC CGC   AGCA CACA UGUGGUUUG         G
                  GG AUGGG GCG   UUGU GUGU ACACCAAAC         U
UCCGGAGUCGCCACGGAG  U^    A   AGA    G    C         CUGCACCGG 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-15-P1d_5p

mirBase accession

MIMAT0003383

Sequence

0- CAGCAGCACACUGUGGUUUGUA -22

Get sequence

Proposed targets

microrna.org: MIMAT0003383
TargetScanVert: rno-miR-497-5p
miRDB: MIMAT0003383

Star sequence

Rno-Mir-15-P1d_3p*

mirBase accession

MIMAT0017230

Sequence

40- CAAACCACACUGUGGUGUUAGA -62

Get sequence

Proposed targets

TargetScanVert: rno-miR-497-3p
miRDB: MIMAT0017230