Mir-15-P1d

MirGeneDB ID

Loc-Mir-15-P1d

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-15-P1a Loc-Mir-15-P1b Loc-Mir-15-P1c Loc-Mir-15-P1c-as Loc-Mir-15-P2a Loc-Mir-15-P2b Loc-Mir-15-P2c Loc-Mir-15-P2d

Orthologues

Ami-Mir-15-P1d Bta-Mir-15-P1d Cfa-Mir-15-P1d Cin-Mir-15-P1 Cja-Mir-15-P1d Cpo-Mir-15-P1d Dno-Mir-15-P1d Dre-Mir-15-P1d Eca-Mir-15-P1d Ete-Mir-15-P1d Hsa-Mir-15-P1d Laf-Mir-15-P1d Mdo-Mir-15-P1d Mml-Mir-15-P1d Mmr-Mir-15-P1d Mmu-Mir-15-P1d Neu-Mir-15-P1d Oan-Mir-15-P1d Ocu-Mir-15-P1d Pab-Mir-15-P1d Rno-Mir-15-P1d Sha-Mir-15-P1d Sto-Mir-15-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(LepOcu1)

LG2: 61580797-61580857 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CAGCUCCCUCCCUGGCUCCUGCGCGCCCUAUAGCAGCACAUCAUGGUUUGCAGGCUCCCAGUACAGGUCCAAACCAUUAUGUGCUGUUACUGGGAGCACUGGGACAUCCACCAUCCAGCAG

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Structure

        10         20         30        40        50          
CAGCUCCCUCCCUGGCU-   GC-| G   UA           C        CAGGCUCCC 
                  CCU   GC CCC  UAGCAGCACAU AUGGUUUG         \
                  GGG   CG GGG  AUUGUCGUGUA UACCAAAC         A
GACGACCUACCACCUACA   UCA^ A   UC           U        CUGGACAUG 
 .       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-15-P1d_5p

mirBase accession

None

Sequence

0- UAGCAGCACAUCAUGGUUUGCA -22

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Co-mature sequence

Loc-Mir-15-P1d_3p

mirBase accession

None

Sequence

39- CAAACCAUUAUGUGCUGUUACU -61

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