Mir-15-P2a

MirGeneDB ID

Loc-Mir-15-P2a

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-15-P1a Loc-Mir-15-P1b Loc-Mir-15-P1c Loc-Mir-15-P1c-as Loc-Mir-15-P1d Loc-Mir-15-P2b Loc-Mir-15-P2c Loc-Mir-15-P2d

Orthologues

Ami-Mir-15-P2a Bta-Mir-15-P2a Cfa-Mir-15-P2a Cin-Mir-15-P2 Cja-Mir-15-P2a Cli-Mir-15-P2a Cmi-Mir-15-P2a Cpi-Mir-15-P2a Cpo-Mir-15-P2a Dno-Mir-15-P2a Dre-Mir-15-P2a1 Dre-Mir-15-P2a2 Eca-Mir-15-P2a Ete-Mir-15-P2a Gga-Mir-15-P2a Gja-Mir-15-P2a Gmo-Mir-15-P2a2 Hsa-Mir-15-P2a Laf-Mir-15-P2a Lch-Mir-15-P2a Mal-Mir-15-P2a2 Mdo-Mir-15-P2a Mml-Mir-15-P2a Mmr-Mir-15-P2a Mmu-Mir-15-P2a Mun-Mir-15-P2a Neu-Mir-15-P2a Oan-Mir-15-P2a Ocu-Mir-15-P2a Pab-Mir-15-P2a Pbv-Mir-15-P2a Rno-Mir-15-P2a Sha-Mir-15-P2a Spt-Mir-15-P2a Sto-Mir-15-P2a Tgu-Mir-15-P2a Tni-Mir-15-P2a2 Xla-Mir-15-P2a3 Xla-Mir-15-P2a4 Xtr-Mir-15-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(LepOcu1)

LG17: 24936650-24936714 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

AGCAUAACGUUUAUAAUGGCAGCCAUGCUUUAGCAGCACGUAAAUAUUGGAGUUAAACCACUUCAUAUCUCUCCAGUAUUGAUCGUGCUGCUGAAGUAAGAUUGUUCAUUUGUCAUCACGAAGAA

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Structure

        10          20        30        40         50        60 
AGCAUAACGUUUAUAAU--     CCA               UA-|         UUAAACCA 
                   GGCAG   UGCUUUAGCAGCACG   AAUAUUGGAG        C
                   UUGUU   AUGAAGUCGUCGUGC   UUAUGACCUC        U
AAGAAGCACUACUGUUUAC     AGA               UAG^         UCUAUACU 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-15-P2a_5p

mirBase accession

None

Sequence

0- UAGCAGCACGUAAAUAUUGGAG -22

Get sequence

Star sequence

Loc-Mir-15-P2a_3p*

mirBase accession

None

Sequence

42- CCAGUAUUGAUCGUGCUGCUGAA -65

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