MirGeneDB 2.1

MirGeneDB ID

Sha-Mir-15-P2a

Family name MIR-15 (all species)
Seed AGCAGCA
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-15-P1a  Sha-Mir-15-P1b  Sha-Mir-15-P1c  Sha-Mir-15-P1d  Sha-Mir-15-P2b  Sha-Mir-15-P2c-v1  Sha-Mir-15-P2c-v2  Sha-Mir-15-P2d 
Orthologues Ami-Mir-15-P2a  Bta-Mir-15-P2a  Cfa-Mir-15-P2a  Cin-Mir-15-P2  Cli-Mir-15-P2a  Cmi-Mir-15-P2a  Cpi-Mir-15-P2a  Cpo-Mir-15-P2a  Dno-Mir-15-P2a  Dre-Mir-15-P2a1  Dre-Mir-15-P2a2  Ete-Mir-15-P2a  Gga-Mir-15-P2a  Gja-Mir-15-P2a  Gmo-Mir-15-P2a2  Hsa-Mir-15-P2a  Lch-Mir-15-P2a  Loc-Mir-15-P2a  Mal-Mir-15-P2a2  Mdo-Mir-15-P2a  Mml-Mir-15-P2a  Mmu-Mir-15-P2a  Mun-Mir-15-P2a  Oan-Mir-15-P2a  Ocu-Mir-15-P2a  Pbv-Mir-15-P2a  Rno-Mir-15-P2a  Spt-Mir-15-P2a  Sto-Mir-15-P2a  Tgu-Mir-15-P2a  Tni-Mir-15-P2a2  Xla-Mir-15-P2a3  Xla-Mir-15-P2a4  Xtr-Mir-15-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(DEVIL_add)
GL856319.1: 19275-19339 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUUGUGUGAUAUCAAUGUCAACAGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUUUAAAAGUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGUUGGCCCCUCUCUGCAAAAAAAAA
Get precursor sequence
Structure
        10          20        30         40        50        60 
CAUUGUGUGAUAUCAAU--      AG   C          -| A        CGUUAAGAUU 
                   GUCAAC  UGC UUAGCAGCAC GU AAUAUUGG          U
                   CGGUUG  AUG AGUCGUCGUG CA UUAUGACC          U
AAAAAAAAACGUCUCUCCC      GA   A          U^ A        UCUAUGAAAA 
   120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-15-P2a_5p

mirBase accessionNone
Sequence
0- UAGCAGCACGUAAAUAUUGGCG -22
Get sequence
Star sequence

Sha-Mir-15-P2a_3p*

mirBase accessionNone
Sequence
42- CCAGUAUUAACUGUGCUGCUGAA -65
Get sequence