Mir-15-P2a

MirGeneDB ID

Sha-Mir-15-P2a

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-15-P1a Sha-Mir-15-P1b Sha-Mir-15-P1c Sha-Mir-15-P1d Sha-Mir-15-P2b Sha-Mir-15-P2c-v1 Sha-Mir-15-P2c-v2 Sha-Mir-15-P2d

Orthologues

Ami-Mir-15-P2a Bta-Mir-15-P2a Cfa-Mir-15-P2a Cin-Mir-15-P2 Cja-Mir-15-P2a Cli-Mir-15-P2a Cmi-Mir-15-P2a Cpi-Mir-15-P2a Cpo-Mir-15-P2a Dno-Mir-15-P2a Dre-Mir-15-P2a1 Dre-Mir-15-P2a2 Eca-Mir-15-P2a Ete-Mir-15-P2a Gga-Mir-15-P2a Gja-Mir-15-P2a Gmo-Mir-15-P2a2 Hsa-Mir-15-P2a Laf-Mir-15-P2a Lch-Mir-15-P2a Loc-Mir-15-P2a Mal-Mir-15-P2a2 Mdo-Mir-15-P2a Mml-Mir-15-P2a Mmr-Mir-15-P2a Mmu-Mir-15-P2a Mun-Mir-15-P2a Neu-Mir-15-P2a Oan-Mir-15-P2a Ocu-Mir-15-P2a Pab-Mir-15-P2a Pbv-Mir-15-P2a Rno-Mir-15-P2a Spt-Mir-15-P2a Sto-Mir-15-P2a Tgu-Mir-15-P2a Tni-Mir-15-P2a2 Xla-Mir-15-P2a3 Xla-Mir-15-P2a4 Xtr-Mir-15-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(DEVIL_add)

GL856319.1: 19275-19339 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAUUGUGUGAUAUCAAUGUCAACAGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUUUAAAAGUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGUUGGCCCCUCUCUGCAAAAAAAAA

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Structure

        10          20        30         40        50        60 
CAUUGUGUGAUAUCAAU--      AG   C          -| A        CGUUAAGAUU 
                   GUCAAC  UGC UUAGCAGCAC GU AAUAUUGG          U
                   CGGUUG  AUG AGUCGUCGUG CA UUAUGACC          U
AAAAAAAAACGUCUCUCCC      GA   A          U^ A        UCUAUGAAAA 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-15-P2a_5p

mirBase accession

None

Sequence

0- UAGCAGCACGUAAAUAUUGGCG -22

Get sequence

Star sequence

Sha-Mir-15-P2a_3p*

mirBase accession

None

Sequence

42- CCAGUAUUAACUGUGCUGCUGAA -65

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