MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-15-P1c

Family name MIR-15 (all species)
Seed AGCAGCA
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-15-P1a  Sha-Mir-15-P1b  Sha-Mir-15-P1d  Sha-Mir-15-P2a  Sha-Mir-15-P2b  Sha-Mir-15-P2c-v1  Sha-Mir-15-P2c-v2  Sha-Mir-15-P2d 
Orthologues Aca-Mir-15-P1c  Ami-Mir-15-P1c  Bta-Mir-15-P1c  Cfa-Mir-15-P1c  Cin-Mir-15-P1  Cja-Mir-15-P1c  Cli-Mir-15-P1c  Cmi-Mir-15-P1c  Cpi-Mir-15-P1c  Cpo-Mir-15-P1c  Dno-Mir-15-P1c  Eca-Mir-15-P1c  Ete-Mir-15-P1c  Gga-Mir-15-P1c  Gja-Mir-15-P1c  Hsa-Mir-15-P1c  Laf-Mir-15-P1c  Lch-Mir-15-P1c  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Mdo-Mir-15-P1c-v1  Mdo-Mir-15-P1c-v2  Mml-Mir-15-P1c  Mmr-Mir-15-P1c  Mmu-Mir-15-P1c-v1  Mmu-Mir-15-P1c-v2  Mmu-Mir-15-P1c-v3  Mun-Mir-15-P1c  Neu-Mir-15-P1c  Oan-Mir-15-P1c  Ocu-Mir-15-P1c  Pab-Mir-15-P1c  Pbv-Mir-15-P1c  Rno-Mir-15-P1c3  Rno-Mir-15-P1c4  Spt-Mir-15-P1c  Tgu-Mir-15-P1c  Xla-Mir-15-P1c1  Xla-Mir-15-P1c2  Xtr-Mir-15-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(DEVIL_add)		 GL867596.1: 500176-500233 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCAACUCCCCGAGAAUCCUUUAGGAGAAAUAGCAGCACGCCAUGGUUUGUAGAGAUAAGGUGAUGCAAACCAUCGUGGGCUGUUACAUUUUCCUAAAGGGCAUGUCAAUCAAGCCGG
Get precursor sequence
Structure
        10         20        30         40        50        
UCCAACUCCCCGAGAAU-            A-|      A   C          GAGAU 
                  CCUUUAGGAGAA  UAGCAGC CGC AUGGUUUGUA     A
                  GGAAAUCCUUUU  AUUGUCG GUG UACCAAACGU     A
GGCCGAACUAACUGUACG            AC^      G   C          AGUGG 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsNo
Tissue expression
-   +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-15-P1c_5p
mirBase accessionNone
Sequence 
0- UAGCAGCACGCCAUGGUUUGUA -22
Get sequence
Star sequence

Sha-Mir-15-P1c_3p*
mirBase accessionNone
Sequence 
36- CAAACCAUCGUGGGCUGUUACA -58
Get sequence