Mir-15-P1c

MirGeneDB ID

Cja-Mir-15-P1c

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-15-P1a Cja-Mir-15-P1b Cja-Mir-15-P1d Cja-Mir-15-P2a Cja-Mir-15-P2b Cja-Mir-15-P2c Cja-Mir-15-P2d

Orthologues

Aca-Mir-15-P1c Ami-Mir-15-P1c Bta-Mir-15-P1c Cfa-Mir-15-P1c Cin-Mir-15-P1 Cli-Mir-15-P1c Cmi-Mir-15-P1c Cpi-Mir-15-P1c Cpo-Mir-15-P1c Dno-Mir-15-P1c Eca-Mir-15-P1c Ete-Mir-15-P1c Gga-Mir-15-P1c Gja-Mir-15-P1c Hsa-Mir-15-P1c Laf-Mir-15-P1c Lch-Mir-15-P1c Loc-Mir-15-P1c Loc-Mir-15-P1c-as Mdo-Mir-15-P1c-v1 Mdo-Mir-15-P1c-v2 Mml-Mir-15-P1c Mmr-Mir-15-P1c Mmu-Mir-15-P1c-v1 Mmu-Mir-15-P1c-v2 Mmu-Mir-15-P1c-v3 Mun-Mir-15-P1c Neu-Mir-15-P1c Oan-Mir-15-P1c Ocu-Mir-15-P1c Pab-Mir-15-P1c Pbv-Mir-15-P1c Rno-Mir-15-P1c3 Rno-Mir-15-P1c4 Sha-Mir-15-P1c Spt-Mir-15-P1c Tgu-Mir-15-P1c Xla-Mir-15-P1c1 Xla-Mir-15-P1c2 Xtr-Mir-15-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021937.1: 126008803-126008861 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAAUCCCCCUUCGUUGACUCCAAGGGGAUACAGCAGCAAUUCAUGUUUUGAAGUGCUCUAAAUGGUUCAAAACGUGAAGUGCUGCUAUACCCCCUUGUGGGGAAGGAAGAAGGUGGGAU

Get precursor sequence

Structure

        10         20         30        40        50         
CAAUCCCCCUUCGUUGA-   -|      A  C       A             GUGCUC 
                  CUC CAAGGGG UA AGCAGCA UUCAUGUUUUGAA      \
                  GGG GUUCCCC AU UCGUCGU AAGUGCAAAACUU      U
UAGGGUGGAAGAAGGAAG   U^      C  A       G             GGUAAA 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

To

Mature sequence

Cja-Mir-15-P1c_5p

mirBase accession

None

Sequence

0- CAGCAGCAAUUCAUGUUUUGAA -22

Get sequence

Star sequence

Cja-Mir-15-P1c_3p*

mirBase accession

None

Sequence

37- CAAAACGUGAAGUGCUGCUAUA -59

Get sequence