MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-15-P1c

Family name MIR-15 (all species)
Seed AGCAGCA
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-15-P1a  Cja-Mir-15-P1b  Cja-Mir-15-P1d  Cja-Mir-15-P2a  Cja-Mir-15-P2b  Cja-Mir-15-P2c  Cja-Mir-15-P2d 
Orthologues Aca-Mir-15-P1c  Ami-Mir-15-P1c  Bta-Mir-15-P1c  Cfa-Mir-15-P1c  Cin-Mir-15-P1  Cli-Mir-15-P1c  Cmi-Mir-15-P1c  Cpi-Mir-15-P1c  Cpo-Mir-15-P1c  Dno-Mir-15-P1c  Eca-Mir-15-P1c  Ete-Mir-15-P1c  Gga-Mir-15-P1c  Gja-Mir-15-P1c  Hsa-Mir-15-P1c  Laf-Mir-15-P1c  Lch-Mir-15-P1c  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Mdo-Mir-15-P1c-v1  Mdo-Mir-15-P1c-v2  Mml-Mir-15-P1c  Mmr-Mir-15-P1c  Mmu-Mir-15-P1c-v1  Mmu-Mir-15-P1c-v2  Mmu-Mir-15-P1c-v3  Mun-Mir-15-P1c  Neu-Mir-15-P1c  Oan-Mir-15-P1c  Ocu-Mir-15-P1c  Pab-Mir-15-P1c  Pbv-Mir-15-P1c  Rno-Mir-15-P1c3  Rno-Mir-15-P1c4  Sha-Mir-15-P1c  Spt-Mir-15-P1c  Tgu-Mir-15-P1c  Xla-Mir-15-P1c1  Xla-Mir-15-P1c2  Xtr-Mir-15-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021937.1: 126008803-126008861 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAUCCCCCUUCGUUGACUCCAAGGGGAUACAGCAGCAAUUCAUGUUUUGAAGUGCUCUAAAUGGUUCAAAACGUGAAGUGCUGCUAUACCCCCUUGUGGGGAAGGAAGAAGGUGGGAU
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Structure
        10         20         30        40        50         
CAAUCCCCCUUCGUUGA-   -|      A  C       A             GUGCUC 
                  CUC CAAGGGG UA AGCAGCA UUCAUGUUUUGAA      \
                  GGG GUUCCCC AU UCGUCGU AAGUGCAAAACUU      U
UAGGGUGGAAGAAGGAAG   U^      C  A       G             GGUAAA 
       110       100        90        80        70        60
Deep sequencing
3' NTU No
MotifsUGUG in loop
Mature sequence

Cja-Mir-15-P1c_5p
mirBase accessionNone
Sequence 
0- CAGCAGCAAUUCAUGUUUUGAA -22
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Star sequence

Cja-Mir-15-P1c_3p*
mirBase accessionNone
Sequence 
37- CAAAACGUGAAGUGCUGCUAUA -59
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