MirGeneDB ID | Cpi-Mir-15-P1c |
Family name |
MIR-15 (all species) |
Seed |
AGCAGCA |
Species |
Western painted turtle (Chrysemys picta bellii) |
MiRBase ID |
cpi-mir-15b
|
Paralogues |
Cpi-Mir-15-P1a
Cpi-Mir-15-P1b
Cpi-Mir-15-P2a
Cpi-Mir-15-P2b
Cpi-Mir-15-P2c
|
Orthologues |
Aca-Mir-15-P1c
Ami-Mir-15-P1c
Bta-Mir-15-P1c
Cfa-Mir-15-P1c
Cin-Mir-15-P1
Cli-Mir-15-P1c
Cmi-Mir-15-P1c
Cpo-Mir-15-P1c
Dno-Mir-15-P1c
Ete-Mir-15-P1c
Gga-Mir-15-P1c
Gja-Mir-15-P1c
Hsa-Mir-15-P1c
Lch-Mir-15-P1c
Loc-Mir-15-P1c
Loc-Mir-15-P1c-as
Mdo-Mir-15-P1c-v1
Mdo-Mir-15-P1c-v2
Mml-Mir-15-P1c
Mmu-Mir-15-P1c-v1
Mmu-Mir-15-P1c-v2
Mmu-Mir-15-P1c-v3
Mun-Mir-15-P1c
Oan-Mir-15-P1c
Ocu-Mir-15-P1c
Pbv-Mir-15-P1c
Rno-Mir-15-P1c3
Rno-Mir-15-P1c4
Sha-Mir-15-P1c
Spt-Mir-15-P1c
Tgu-Mir-15-P1c
Xla-Mir-15-P1c1
Xla-Mir-15-P1c2
Xtr-Mir-15-P1c
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Olfactores
|
Genome context (chrPic1) |
JH584720: 2499646-2499703 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUUUCACCAUUGUUGGGCUUUGAGGAGAUGUAGCAGCACAUCAUGGUUUGUAGGGACAAGGAGAUACAGACCAUUCUGGGCUGCCUCAUUACCUCAAGGAUAGACAAGAAAGGGAGCU
Get precursor sequence
|
Structure | 10 20 30 40 50
AUUUCACCAUUGUUGGG--| A UA A UC GGGAC
CUUUGAGG GAUG GCAGC CA AUGGUUUGUA A
GGAACUCC UUAC CGUCG GU UACCAGACAU A
UCGAGGGAAAGAACAGAUA^ A UC G CU AGAGG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Cpi-Mir-15-P1c_5p |
mirBase accession | MIMAT0037632 |
Sequence |
0- UAGCAGCACAUCAUGGUUUGUA -22
Get sequence
|
Star sequence |
Cpi-Mir-15-P1c_3p* |
mirBase accession | MIMAT0037633 |
Sequence |
36- CAGACCAUUCUGGGCUGCCUCA -58
Get sequence
|