Mir-15-P1c

MirGeneDB ID

Mun-Mir-15-P1c

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Microcaecilia (Microcaecilia unicolor)

MiRBase ID

Paralogues

Mun-Mir-15-P1a Mun-Mir-15-P1b Mun-Mir-15-P2a Mun-Mir-15-P2b Mun-Mir-15-P2c

Orthologues

Aca-Mir-15-P1c Ami-Mir-15-P1c Bta-Mir-15-P1c Cfa-Mir-15-P1c Cin-Mir-15-P1 Cja-Mir-15-P1c Cli-Mir-15-P1c Cmi-Mir-15-P1c Cpi-Mir-15-P1c Cpo-Mir-15-P1c Dno-Mir-15-P1c Eca-Mir-15-P1c Ete-Mir-15-P1c Gga-Mir-15-P1c Gja-Mir-15-P1c Hsa-Mir-15-P1c Laf-Mir-15-P1c Lch-Mir-15-P1c Loc-Mir-15-P1c Loc-Mir-15-P1c-as Mdo-Mir-15-P1c-v1 Mdo-Mir-15-P1c-v2 Mml-Mir-15-P1c Mmr-Mir-15-P1c Mmu-Mir-15-P1c-v1 Mmu-Mir-15-P1c-v2 Mmu-Mir-15-P1c-v3 Neu-Mir-15-P1c Oan-Mir-15-P1c Ocu-Mir-15-P1c Pab-Mir-15-P1c Pbv-Mir-15-P1c Rno-Mir-15-P1c3 Rno-Mir-15-P1c4 Sha-Mir-15-P1c Spt-Mir-15-P1c Tgu-Mir-15-P1c Xla-Mir-15-P1c1 Xla-Mir-15-P1c2 Xtr-Mir-15-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(Mun_miRNA_loci)

15-P1c_LR594638.1:44462646-44462903: 101-158 [+]

Precursor
(pre-Mir +30nt flank)

UGAUUUCAGCAGGUGAGCUUUGGGGAGAUGUAGCAGCACAUCAUGGUUUGUUGUGACAAGGAGAUACAGACCAUUCUGAGCUGCCUCAUUUCCUCAAGGAAAAGGCAAGAGAAUAAGC

Get precursor sequence

Structure

        10          20        30        40        50        
UGAUUUCAGCAGGUGAG--|            UA     A  UC         UGUGAC 
                   CUUUGGGGAGAUG  GCAGC CA  AUGGUUUGU      A
                   GGAACUCCUUUAC  CGUCG GU  UACCAGACA      A
CGAAUAAGAGAACGGAAAA^            UC     A  CU         UAGAGG 
      110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

To

Mature sequence

Mun-Mir-15-P1c_5p

mirBase accession

None

Sequence

0- UAGCAGCACAUCAUGGUUUGUU -22

Get sequence

Star sequence

Mun-Mir-15-P1c_3p*

mirBase accession

None

Sequence

36- CAGACCAUUCUGAGCUGCCUCA -58

Get sequence