MirGeneDB 3.0

MirGeneDB ID

Bta-Mir-15-P1c

Family name MIR-15 (all species)
Seed AGCAGCA
Species Cow (Bos taurus)
MiRBase ID bta-mir-424
Paralogues Bta-Mir-15-P1a  Bta-Mir-15-P1b  Bta-Mir-15-P1d  Bta-Mir-15-P2a  Bta-Mir-15-P2b  Bta-Mir-15-P2c  Bta-Mir-15-P2d 
Orthologues Aca-Mir-15-P1c  Ami-Mir-15-P1c  Cfa-Mir-15-P1c  Cin-Mir-15-P1  Cja-Mir-15-P1c  Cli-Mir-15-P1c  Cmi-Mir-15-P1c  Cpi-Mir-15-P1c  Cpo-Mir-15-P1c  Dno-Mir-15-P1c  Eca-Mir-15-P1c  Ete-Mir-15-P1c  Gga-Mir-15-P1c  Gja-Mir-15-P1c  Hsa-Mir-15-P1c  Laf-Mir-15-P1c  Lch-Mir-15-P1c  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Mdo-Mir-15-P1c-v1  Mdo-Mir-15-P1c-v2  Mml-Mir-15-P1c  Mmr-Mir-15-P1c  Mmu-Mir-15-P1c-v1  Mmu-Mir-15-P1c-v2  Mmu-Mir-15-P1c-v3  Mun-Mir-15-P1c  Neu-Mir-15-P1c  Oan-Mir-15-P1c  Ocu-Mir-15-P1c  Pab-Mir-15-P1c  Pbv-Mir-15-P1c  Rno-Mir-15-P1c3  Rno-Mir-15-P1c4  Sha-Mir-15-P1c  Spt-Mir-15-P1c  Tgu-Mir-15-P1c  Xla-Mir-15-P1c1  Xla-Mir-15-P1c2  Xtr-Mir-15-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037357.1: 18242762-18242820 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1c)
Mir-450-P3 NC_037357.1: 18236226-18236283 [-] UCSC Ensembl
Mir-450-P2 NC_037357.1: 18236396-18236452 [-] UCSC Ensembl
Mir-450-P1 NC_037357.1: 18236541-18236597 [-] UCSC Ensembl
Mir-542 NC_037357.1: 18237457-18237515 [-] UCSC Ensembl
Mir-15-P2c NC_037357.1: 18242411-18242473 [-] UCSC Ensembl
Mir-15-P1c NC_037357.1: 18242762-18242820 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGAUCCUCCUUCGUUGACUCCGAGGGGAUGCAGCAGCAAUUCAUGUUUUGAAGUGCUUUAAACGGUUCAAAACGUGAGGCGCUGCUAUACCCCCUUGCGAGGAAGUAGGAAGGUGGGGU
Get precursor sequence
Structure
        10         20         30        40        50         
CGAUCCUCCUUCGUUGA-   -|      A  C      AA             GUGCUU 
                  CUC CGAGGGG UG AGCAGC  UUCAUGUUUUGAA      \
                  GAG GUUCCCC AU UCGUCG  GAGUGCAAAACUU      U
UGGGGUGGAAGGAUGAAG   C^      C  A      CG             GGCAAA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-15-P1c_5p

mirBase accessionMIMAT0013593
Sequence
0- CAGCAGCAAUUCAUGUUUUGAA -22
Get sequence
Proposed targets TargetScanVert: bta-miR-424-5p
Star sequence

Bta-Mir-15-P1c_3p*

mirBase accessionMIMAT0015304
Sequence
37- CAAAACGUGAGGCGCUGCUAUA -59
Get sequence
Proposed targets TargetScanVert: bta-miR-424-3p