MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-15-P1c

Family name MIR-15 (all species)
Seed AGCAGCA
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-424
Paralogues Ocu-Mir-15-P1a  Ocu-Mir-15-P1b  Ocu-Mir-15-P1d  Ocu-Mir-15-P2a  Ocu-Mir-15-P2b  Ocu-Mir-15-P2c  Ocu-Mir-15-P2d 
Orthologues Aca-Mir-15-P1c  Ami-Mir-15-P1c  Bta-Mir-15-P1c  Cfa-Mir-15-P1c  Cin-Mir-15-P1  Cli-Mir-15-P1c  Cmi-Mir-15-P1c  Cpi-Mir-15-P1c  Cpo-Mir-15-P1c  Dno-Mir-15-P1c  Ete-Mir-15-P1c  Gga-Mir-15-P1c  Gja-Mir-15-P1c  Hsa-Mir-15-P1c  Lch-Mir-15-P1c  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Mdo-Mir-15-P1c-v1  Mdo-Mir-15-P1c-v2  Mml-Mir-15-P1c  Mmu-Mir-15-P1c-v1  Mmu-Mir-15-P1c-v2  Mmu-Mir-15-P1c-v3  Mun-Mir-15-P1c  Oan-Mir-15-P1c  Pbv-Mir-15-P1c  Rno-Mir-15-P1c3  Rno-Mir-15-P1c4  Sha-Mir-15-P1c  Spt-Mir-15-P1c  Tgu-Mir-15-P1c  Xla-Mir-15-P1c1  Xla-Mir-15-P1c2  Xtr-Mir-15-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(oryCun2_add)
chrX: 108856105-108856163 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1c)
Mir-450-P3 chrX: 108850008-108850065 [-] UCSC Ensembl
Mir-450-P2 chrX: 108850173-108850229 [-] UCSC Ensembl
Mir-450-P1 chrX: 108850343-108850399 [-] UCSC Ensembl
Mir-542-v1 chrX: 108850875-108850933 [-] UCSC Ensembl
Mir-542-v2 chrX: 108850876-108850932 [-] UCSC Ensembl
Mir-12092 chrX: 108854560-108854616 [-] UCSC Ensembl
Mir-15-P2c chrX: 108855773-108855835 [-] UCSC Ensembl
Mir-15-P1c chrX: 108856105-108856163 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GACCCCCCCUUCGUUGACUCCGAGGGGAUGCAGCAGCAAUUCAUGUUUUGAAGUGCUAUGAUUCAUUCAAAACGUGAGGCGCUGCUAUACCCCCUCGCGGGGAAAAUAGAAGGCGGGAG
Get precursor sequence
Structure
        10         20         30        40        50         
GACCCCCCCUUCGUUGA-   -|      A  C      AA             GUGCUA 
                  CUC CGAGGGG UG AGCAGC  UUCAUGUUUUGAA      \
                  GGG GCUCCCC AU UCGUCG  GAGUGCAAAACUU      U
GAGGGCGGAAGAUAAAAG   C^      C  A      CG             ACUUAG 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
He Ki Te To Wh
Mature sequence

Ocu-Mir-15-P1c_5p

mirBase accessionMIMAT0048443
Sequence
0- CAGCAGCAAUUCAUGUUUUGAA -22
Get sequence
Star sequence

Ocu-Mir-15-P1c_3p*

mirBase accessionMIMAT0048444
Sequence
37- CAAAACGUGAGGCGCUGCUAUA -59
Get sequence