Mir-15-P1c

MirGeneDB ID

Cfa-Mir-15-P1c

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-424

Paralogues

Cfa-Mir-15-P1a Cfa-Mir-15-P1b Cfa-Mir-15-P1d Cfa-Mir-15-P2a Cfa-Mir-15-P2b Cfa-Mir-15-P2c Cfa-Mir-15-P2d

Orthologues

Aca-Mir-15-P1c Ami-Mir-15-P1c Bta-Mir-15-P1c Cin-Mir-15-P1 Cja-Mir-15-P1c Cli-Mir-15-P1c Cmi-Mir-15-P1c Cpi-Mir-15-P1c Cpo-Mir-15-P1c Dno-Mir-15-P1c Eca-Mir-15-P1c Ete-Mir-15-P1c Gga-Mir-15-P1c Gja-Mir-15-P1c Hsa-Mir-15-P1c Laf-Mir-15-P1c Lch-Mir-15-P1c Loc-Mir-15-P1c Loc-Mir-15-P1c-as Mdo-Mir-15-P1c-v1 Mdo-Mir-15-P1c-v2 Mml-Mir-15-P1c Mmr-Mir-15-P1c Mmu-Mir-15-P1c-v1 Mmu-Mir-15-P1c-v2 Mmu-Mir-15-P1c-v3 Mun-Mir-15-P1c Neu-Mir-15-P1c Oan-Mir-15-P1c Ocu-Mir-15-P1c Pab-Mir-15-P1c Pbv-Mir-15-P1c Rno-Mir-15-P1c3 Rno-Mir-15-P1c4 Sha-Mir-15-P1c Spt-Mir-15-P1c Tgu-Mir-15-P1c Xla-Mir-15-P1c1 Xla-Mir-15-P1c2 Xtr-Mir-15-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(canFam3_add)

chrX: 105183436-105183494 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1c)

Mir-450-P3 chrX: 105177287-105177344 [-] UCSC Ensembl
Mir-450-P2 chrX: 105177456-105177512 [-] UCSC Ensembl
Mir-542-v1 chrX: 105178359-105178417 [-] UCSC Ensembl
Mir-542-v2 chrX: 105178360-105178416 [-] UCSC Ensembl
Mir-15-P2c chrX: 105183139-105183201 [-] UCSC Ensembl
Mir-15-P1c chrX: 105183436-105183494 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAUCCCCCCUUCGUUGACUCCGAGGGGAUGCAGCAGCAAUUCAUGUUUUGAAGUGCUUUAAAUGGUUCAAAACGUGAGGCGCUGCUAUACCCCUUCGUGGGGAAGUUGGAAGGUUGGGG

Get precursor sequence

Structure

        10         20         30        40        50         
GAUCCCCCCUUCGUUGA-   -|      A  C      AA             GUGCUU 
                  CUC CGAGGGG UG AGCAGC  UUCAUGUUUUGAA      \
                  GGG GCUUCCC AU UCGUCG  GAGUGCAAAACUU      U
GGGGUUGGAAGGUUGAAG   U^      C  A      CG             GGUAAA 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-15-P1c_5p

mirBase accession

None

Sequence

0- CAGCAGCAAUUCAUGUUUUGAA -22

Get sequence

Star sequence

Cfa-Mir-15-P1c_3p*

mirBase accession

MIMAT0006745

Sequence

37- CAAAACGUGAGGCGCUGCUAUA -59

Get sequence

Proposed targets

TargetScanVert: cfa-miR-424
miRDB: MIMAT0006745