MirGeneDB 2.1

MirGeneDB ID

Cfa-Mir-15-P1c

Family name MIR-15 (all species)
Seed AGCAGCA
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-424
Paralogues Cfa-Mir-15-P1a  Cfa-Mir-15-P1b  Cfa-Mir-15-P1d  Cfa-Mir-15-P2a  Cfa-Mir-15-P2b  Cfa-Mir-15-P2c  Cfa-Mir-15-P2d 
Orthologues Aca-Mir-15-P1c  Ami-Mir-15-P1c  Bta-Mir-15-P1c  Cin-Mir-15-P1  Cli-Mir-15-P1c  Cmi-Mir-15-P1c  Cpi-Mir-15-P1c  Cpo-Mir-15-P1c  Dno-Mir-15-P1c  Ete-Mir-15-P1c  Gga-Mir-15-P1c  Gja-Mir-15-P1c  Hsa-Mir-15-P1c  Lch-Mir-15-P1c  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Mdo-Mir-15-P1c-v1  Mdo-Mir-15-P1c-v2  Mml-Mir-15-P1c  Mmu-Mir-15-P1c-v1  Mmu-Mir-15-P1c-v2  Mmu-Mir-15-P1c-v3  Mun-Mir-15-P1c  Oan-Mir-15-P1c  Ocu-Mir-15-P1c  Pbv-Mir-15-P1c  Rno-Mir-15-P1c3  Rno-Mir-15-P1c4  Sha-Mir-15-P1c  Spt-Mir-15-P1c  Tgu-Mir-15-P1c  Xla-Mir-15-P1c1  Xla-Mir-15-P1c2  Xtr-Mir-15-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(canFam3_add)
chrX: 105183436-105183494 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1c)
Mir-450-P3 chrX: 105177287-105177344 [-] UCSC Ensembl
Mir-450-P2 chrX: 105177456-105177512 [-] UCSC Ensembl
Mir-542-v1 chrX: 105178359-105178417 [-] UCSC Ensembl
Mir-542-v2 chrX: 105178360-105178416 [-] UCSC Ensembl
Mir-15-P2c chrX: 105183139-105183201 [-] UCSC Ensembl
Mir-15-P1c chrX: 105183436-105183494 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAUCCCCCCUUCGUUGACUCCGAGGGGAUGCAGCAGCAAUUCAUGUUUUGAAGUGCUUUAAAUGGUUCAAAACGUGAGGCGCUGCUAUACCCCUUCGUGGGGAAGUUGGAAGGUUGGGG
Get precursor sequence
Structure
        10         20         30        40        50         
GAUCCCCCCUUCGUUGA-   -|      A  C      AA             GUGCUU 
                  CUC CGAGGGG UG AGCAGC  UUCAUGUUUUGAA      \
                  GGG GCUUCCC AU UCGUCG  GAGUGCAAAACUU      U
GGGGUUGGAAGGUUGAAG   U^      C  A      CG             GGUAAA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-15-P1c_5p

mirBase accessionNone
Sequence
0- CAGCAGCAAUUCAUGUUUUGAA -22
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Star sequence

Cfa-Mir-15-P1c_3p*

mirBase accessionMIMAT0006745
Sequence
37- CAAAACGUGAGGCGCUGCUAUA -59
Get sequence
Proposed targets TargetScanVert: cfa-miR-424
miRDB: MIMAT0006745