Mir-15-P1c

MirGeneDB ID

Cmi-Mir-15-P1c

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-15-P1a Cmi-Mir-15-P1b Cmi-Mir-15-P2a Cmi-Mir-15-P2b Cmi-Mir-15-P2c

Orthologues

Aca-Mir-15-P1c Ami-Mir-15-P1c Bta-Mir-15-P1c Cfa-Mir-15-P1c Cin-Mir-15-P1 Cja-Mir-15-P1c Cli-Mir-15-P1c Cpi-Mir-15-P1c Cpo-Mir-15-P1c Dno-Mir-15-P1c Eca-Mir-15-P1c Ete-Mir-15-P1c Gga-Mir-15-P1c Gja-Mir-15-P1c Hsa-Mir-15-P1c Laf-Mir-15-P1c Lch-Mir-15-P1c Loc-Mir-15-P1c Loc-Mir-15-P1c-as Mdo-Mir-15-P1c-v1 Mdo-Mir-15-P1c-v2 Mml-Mir-15-P1c Mmr-Mir-15-P1c Mmu-Mir-15-P1c-v1 Mmu-Mir-15-P1c-v2 Mmu-Mir-15-P1c-v3 Mun-Mir-15-P1c Neu-Mir-15-P1c Oan-Mir-15-P1c Ocu-Mir-15-P1c Pab-Mir-15-P1c Pbv-Mir-15-P1c Rno-Mir-15-P1c3 Rno-Mir-15-P1c4 Sha-Mir-15-P1c Spt-Mir-15-P1c Tgu-Mir-15-P1c Xla-Mir-15-P1c1 Xla-Mir-15-P1c2 Xtr-Mir-15-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635856.1: 9695363-9695423 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACACAAAAAAAGUCUCGCUUGGAGGUGAUGUAGCAGCACAUCAUGGUUUGUAGGUAUACUGGAAGAUAACAGACCAUACUGAGCUGCCGCAUGACUGCUAAAGGUGUUCAAGCCGACCCAG

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Structure

        10          20        30        40        50          
ACACAAAAAAAGUCUCGC--|   A   G   UA     A  UC         AGGUAUAC 
                    UUGG GGU AUG  GCAGC CA  AUGGUUUGU        \
                    AAUC UCA UAC  CGUCG GU  UACCAGACA        U
GACCCAGCCGAACUUGUGGA^   G   G   GC     A  CA         AUAGAAGG 
 .       110       100        90        80        70

Deep sequencing

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Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-15-P1c_5p

mirBase accession

None

Sequence

0- UAGCAGCACAUCAUGGUUUGUAG -23

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Star sequence

Cmi-Mir-15-P1c_3p*

mirBase accession

None

Sequence

38- ACAGACCAUACUGAGCUGCCGCA -61

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