MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-542-v2

Family name MIR-542 (all species)
Seed UGUGACA
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-542
Paralogues Cfa-Mir-542-v1 
Orthologues Bta-Mir-542  Cja-Mir-542  Cpo-Mir-542  Dno-Mir-542-v2  Eca-Mir-542-v2  Ete-Mir-542  Hsa-Mir-542-v2  Laf-Mir-542  Mml-Mir-542-v2  Mmr-Mir-542-v2  Mmu-Mir-542  Ocu-Mir-542-v2  Pab-Mir-542 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)		 chrX: 105178360-105178416 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-542-v2)		 Mir-450-P3 chrX: 105177287-105177344 [-] UCSC Ensembl
Mir-450-P2 chrX: 105177456-105177512 [-] UCSC Ensembl
Mir-542-v1 chrX: 105178359-105178417 [-] UCSC Ensembl
Mir-542-v2 chrX: 105178360-105178416 [-] UCSC Ensembl
Mir-15-P2c chrX: 105183139-105183201 [-] UCSC Ensembl
Mir-15-P1c chrX: 105183436-105183494 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGUCACAGAUGCGCAGACCUCAGACAUCUCGGGGAUCAUCAUGUCACGAGAUACCACUGUGCACUUGUGACAGAUUGAUAACUGAAAGGUCUGGGAGCCACUCAUCUUCAUAGCAA
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Structure
        10          20        30        40        50        
GGGUCACAGAUGCGCAGAC--|      AUC    GG    UCA         AUACCA 
                     CUCAGAC   UCGG  AUCA   UGUCACGAG      \
                     GGGUCUG   AGUC  UAGU   ACAGUGUUC      C
AACGAUACUUCUACUCACCGA^      GAA    AA    UAG         ACGUGU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-542-v2_5p*
mirBase accessionNone
Sequence 
0- CGGGGAUCAUCAUGUCACGAGA -22
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Mature sequence

Cfa-Mir-542-v2_3p
mirBase accessionMIMAT0006747
Sequence 
35- UUGUGACAGAUUGAUAACUGAA -57
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Proposed targets TargetScanVert: cfa-miR-542
miRDB: MIMAT0006747