MirGeneDB ID | Cja-Mir-15-P2a |
---|---|
Family name | MIR-15 (all species) |
Seed | AGCAGCA |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | Cja-Mir-15-P1a Cja-Mir-15-P1b Cja-Mir-15-P1c Cja-Mir-15-P1d Cja-Mir-15-P2b Cja-Mir-15-P2c Cja-Mir-15-P2d |
Orthologues | Ami-Mir-15-P2a Bta-Mir-15-P2a Cfa-Mir-15-P2a Cin-Mir-15-P2 Cli-Mir-15-P2a Cmi-Mir-15-P2a Cpi-Mir-15-P2a Cpo-Mir-15-P2a Dno-Mir-15-P2a Dre-Mir-15-P2a1 Dre-Mir-15-P2a2 Eca-Mir-15-P2a Ete-Mir-15-P2a Gga-Mir-15-P2a Gja-Mir-15-P2a Gmo-Mir-15-P2a2 Hsa-Mir-15-P2a Laf-Mir-15-P2a Lch-Mir-15-P2a Loc-Mir-15-P2a Mal-Mir-15-P2a2 Mdo-Mir-15-P2a Mml-Mir-15-P2a Mmr-Mir-15-P2a Mmu-Mir-15-P2a Mun-Mir-15-P2a Neu-Mir-15-P2a Oan-Mir-15-P2a Ocu-Mir-15-P2a Pab-Mir-15-P2a Pbv-Mir-15-P2a Rno-Mir-15-P2a Sha-Mir-15-P2a Spt-Mir-15-P2a Sto-Mir-15-P2a Tgu-Mir-15-P2a Tni-Mir-15-P2a2 Xla-Mir-15-P2a3 Xla-Mir-15-P2a4 Xtr-Mir-15-P2a |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Olfactores |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021915.1: 65214173-65214237 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GCUCUUAUCAUAGCAAUGUCAGCAGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUCUAAAAUUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGUUGACCAUACUCUACAAUUGUAUUGet precursor sequence |
Structure | 10 20 30 40 50 60 GCUCUUAUCAUAGCAAU-- AG C -| A CGUUAAGAUU GUCAGC UGC UUAGCAGCAC GU AAUAUUGG C CAGUUG AUG AGUCGUCGUG CA UUAUGACC U UUAUGUUAACAUCUCAUAC GA A U^ A UCUAUUAAAA 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Mature sequence | Cja-Mir-15-P2a_5p |
mirBase accession | None |
Sequence |
0- UAGCAGCACGUAAAUAUUGGCG -22
Get sequence
|
Star sequence | Cja-Mir-15-P2a_3p* |
mirBase accession | None |
Sequence |
42- CCAGUAUUAACUGUGCUGCUGAA -65
Get sequence
|