Mir-15-P2a2

MirGeneDB ID

Dre-Mir-15-P2a2

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-16c

Paralogues

Dre-Mir-15-P1a1 Dre-Mir-15-P1a2 Dre-Mir-15-P1b Dre-Mir-15-P1d Dre-Mir-15-P2a1 Dre-Mir-15-P2b Dre-Mir-15-P2c-v1 Dre-Mir-15-P2c-v2 Dre-Mir-15-P2d

Orthologues

Ami-Mir-15-P2a Bta-Mir-15-P2a Cfa-Mir-15-P2a Cin-Mir-15-P2 Cja-Mir-15-P2a Cli-Mir-15-P2a Cmi-Mir-15-P2a Cpi-Mir-15-P2a Cpo-Mir-15-P2a Dno-Mir-15-P2a Eca-Mir-15-P2a Ete-Mir-15-P2a Gga-Mir-15-P2a Gja-Mir-15-P2a Gmo-Mir-15-P2a2 Hsa-Mir-15-P2a Laf-Mir-15-P2a Lch-Mir-15-P2a Loc-Mir-15-P2a Mal-Mir-15-P2a2 Mdo-Mir-15-P2a Mml-Mir-15-P2a Mmr-Mir-15-P2a Mmu-Mir-15-P2a Mun-Mir-15-P2a Neu-Mir-15-P2a Oan-Mir-15-P2a Ocu-Mir-15-P2a Pab-Mir-15-P2a Pbv-Mir-15-P2a Rno-Mir-15-P2a Sha-Mir-15-P2a Spt-Mir-15-P2a Sto-Mir-15-P2a Tgu-Mir-15-P2a Tni-Mir-15-P2a2 Xtr-Mir-15-P2a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Olfactores

Genome context
(danRer11)

chr9: 29652389-29652453 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2a2)

Mir-15-P2a2 chr9: 29652389-29652453 [-] UCSC Ensembl
Mir-15-P1a2 chr9: 29652531-29652588 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUGUGUGUGUGUGCGUGUGUUGUCUUGCUUUAGCAGCAUGUAAAUAUUGGAGUUACUCCUUGGCCAAUGCCUCCAAUAUUGCUCGUGCUGCUGAAGCAAGAAGUCACCAAGCAGCACAUGCACGU

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Structure

        10          20        30        40         50        60 
UUGUGUGUGUGUGCGUG--  UUG                  UA-|         UUACUCCU 
                   UG   UCUUGCUUUAGCAGCAUG   AAUAUUGGAG        U
                   AC   AGAACGAAGUCGUCGUGC   UUAUAACCUC        G
UGCACGUACACGACGAACC  UGA                  UCG^         CGUAACCG 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-15-P2a2_5p

mirBase accession

MIMAT0001776

Sequence

0- UAGCAGCAUGUAAAUAUUGGAGU -23

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Proposed targets

TargetScanFish: dre-miR-16c

Co-mature sequence

Dre-Mir-15-P2a2_3p

mirBase accession

MIMAT0031937

Sequence

41- UCCAAUAUUGCUCGUGCUGCUGAA -65

Get sequence