MirGeneDB 3.0

MirGeneDB ID

Laf-Mir-15-P2a

Family name MIR-15 (all species)
Seed AGCAGCA
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues Laf-Mir-15-P1a  Laf-Mir-15-P1b  Laf-Mir-15-P1c  Laf-Mir-15-P1d  Laf-Mir-15-P2b  Laf-Mir-15-P2c  Laf-Mir-15-P2d 
Orthologues Ami-Mir-15-P2a  Bta-Mir-15-P2a  Cfa-Mir-15-P2a  Cin-Mir-15-P2  Cja-Mir-15-P2a  Cli-Mir-15-P2a  Cmi-Mir-15-P2a  Cpi-Mir-15-P2a  Cpo-Mir-15-P2a  Dno-Mir-15-P2a  Dre-Mir-15-P2a1  Dre-Mir-15-P2a2  Eca-Mir-15-P2a  Ete-Mir-15-P2a  Gga-Mir-15-P2a  Gja-Mir-15-P2a  Gmo-Mir-15-P2a2  Hsa-Mir-15-P2a  Lch-Mir-15-P2a  Loc-Mir-15-P2a  Mal-Mir-15-P2a2  Mdo-Mir-15-P2a  Mml-Mir-15-P2a  Mmr-Mir-15-P2a  Mmu-Mir-15-P2a  Mun-Mir-15-P2a  Neu-Mir-15-P2a  Oan-Mir-15-P2a  Ocu-Mir-15-P2a  Pab-Mir-15-P2a  Pbv-Mir-15-P2a  Rno-Mir-15-P2a  Sha-Mir-15-P2a  Spt-Mir-15-P2a  Sto-Mir-15-P2a  Tgu-Mir-15-P2a  Tni-Mir-15-P2a2  Xla-Mir-15-P2a3  Xla-Mir-15-P2a4  Xtr-Mir-15-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_000001905.1_Loxafr3.0)
GL010050.1: 31640465-31640529 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUCUUACGAUAUCAAAGUCAGCAGUGCCUUAGCAGCACGUAAAUAUUGGAGUUAAGGUUCUAAAAUUGUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGUUGGCCACAUUCUACAUAGCAUUU
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Structure
        10          20        30         40        50        60 
GGUCUUACGAUAUCAAA--      AG   C          -| A          UUAAGGUU 
                   GUCAGC  UGC UUAGCAGCAC GU AAUAUUGGAG        C
                   CGGUUG  AUG AGUCGUCGUG CA UUAUGACCUC        U
UUUACGAUACAUCUUACAC      GA   A          U^ A          UGUUAAAA 
   120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Wh
Mature sequence

Laf-Mir-15-P2a_5p

mirBase accessionNone
Sequence
0- UAGCAGCACGUAAAUAUUGGAG -22
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Star sequence

Laf-Mir-15-P2a_3p*

mirBase accessionNone
Sequence
42- CCAGUAUUAACUGUGCUGCUGAA -65
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