Mir-15-P2a2

MirGeneDB ID

Tni-Mir-15-P2a2

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-16

Paralogues

Tni-Mir-15-P1a2 Tni-Mir-15-P1b Tni-Mir-15-P2b

Orthologues

Ami-Mir-15-P2a Bta-Mir-15-P2a Cfa-Mir-15-P2a Cin-Mir-15-P2 Cja-Mir-15-P2a Cli-Mir-15-P2a Cmi-Mir-15-P2a Cpi-Mir-15-P2a Cpo-Mir-15-P2a Dno-Mir-15-P2a Dre-Mir-15-P2a2 Eca-Mir-15-P2a Ete-Mir-15-P2a Gga-Mir-15-P2a Gja-Mir-15-P2a Gmo-Mir-15-P2a2 Hsa-Mir-15-P2a Laf-Mir-15-P2a Lch-Mir-15-P2a Loc-Mir-15-P2a Mal-Mir-15-P2a2 Mdo-Mir-15-P2a Mml-Mir-15-P2a Mmr-Mir-15-P2a Mmu-Mir-15-P2a Mun-Mir-15-P2a Neu-Mir-15-P2a Oan-Mir-15-P2a Ocu-Mir-15-P2a Pab-Mir-15-P2a Pbv-Mir-15-P2a Rno-Mir-15-P2a Sha-Mir-15-P2a Spt-Mir-15-P2a Sto-Mir-15-P2a Tgu-Mir-15-P2a Xtr-Mir-15-P2a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Olfactores

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

2: 11019481-11019546 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2a2)

Mir-15-P1a2 2: 11019294-11019352 [+] UCSC Ensembl
Mir-15-P2a2 2: 11019481-11019546 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UACCAGAUCCACGGAAAGGCCACUUUACUGUAGCAGCACGUAAAUAUUGGAGUUAAGGCUCUCUGUGAUACCUCCAGUAUUGAUCGUGCUGCUGAAGCAAAGAGGACCAUUCACACACGUUGUCAA

Get precursor sequence

Structure

        10          20        30        40         50        60  
UACCAGAUCCACGGAAA-  -  A    A  G          UA-|         UUAAGGCUC 
                  GG CC CUUU CU UAGCAGCACG   AAUAUUGGAG         \
                  CC GG GAAA GA GUCGUCGUGC   UUAUGACCUC         U
AACUGUUGCACACACUUA  A  A    C  A          UAG^         CAUAGUGUC 
    120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-15-P2a2_5p

mirBase accession

MIMAT0003108

Sequence

0- UAGCAGCACGUAAAUAUUGGAG -22

Get sequence

Star sequence

Tni-Mir-15-P2a2_3p*

mirBase accession

None

Sequence

43- CCAGUAUUGAUCGUGCUGCUGAA -66

Get sequence