Mir-15-P2c-v2

MirGeneDB ID

Sha-Mir-15-P2c-v2

Family name

MIR-15 (all species)

Seed

UAGCAGC

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-15-P1a Sha-Mir-15-P1b Sha-Mir-15-P1c Sha-Mir-15-P1d Sha-Mir-15-P2a Sha-Mir-15-P2b Sha-Mir-15-P2c-v1 Sha-Mir-15-P2d

Orthologues

Aca-Mir-15-P2c Ami-Mir-15-P2c Bta-Mir-15-P2c Cfa-Mir-15-P2c Cin-Mir-15-P2 Cja-Mir-15-P2c Cli-Mir-15-P2c Cmi-Mir-15-P2c Cpi-Mir-15-P2c Cpo-Mir-15-P2c Dno-Mir-15-P2c Dre-Mir-15-P2c-v1 Dre-Mir-15-P2c-v2 Eca-Mir-15-P2c Ete-Mir-15-P2c Gga-Mir-15-P2c Gja-Mir-15-P2c Hsa-Mir-15-P2c Laf-Mir-15-P2c Lch-Mir-15-P2c Loc-Mir-15-P2c Mdo-Mir-15-P2c-v1 Mdo-Mir-15-P2c-v2 Mml-Mir-15-P2c Mmr-Mir-15-P2c Mmu-Mir-15-P2c Mun-Mir-15-P2c Neu-Mir-15-P2c-v1 Neu-Mir-15-P2c-v2 Oan-Mir-15-P2c Ocu-Mir-15-P2c Pab-Mir-15-P2c Pbv-Mir-15-P2c Rno-Mir-15-P2c3 Rno-Mir-15-P2c4 Spt-Mir-15-P2c Tgu-Mir-15-P2c Xla-Mir-15-P2c1 Xla-Mir-15-P2c2 Xtr-Mir-15-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(DEVIL_add)

GL867596.1: 499969-500031 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUCUCGAGCGACCCUCCGCUCAGCUGUGCCCUAGCAGCACGUCAAAACUGGAGUCAUCUACCUAAAUCCUCCAGUAUUGCCUUGCUGCUUGAGUGAAGUAGGAGCCUAAUUCAUUUCUCUACC

Get precursor sequence

Structure

        10         20         30        40        50        60 
GUCUCGAGCGACCCUCC-    A-|  G   CCU       CGU   A      GUCAUCUA 
                  GCUC  GCU UGC   AGCAGCA   CAA ACUGGA        \
                  CGAG  UGA GUG   UCGUCGU   GUU UGACCU        C
CCAUCUCUUUACUUAAUC    GA^  A   AGU       UCC   A      CCUAAAUC 
 120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-15-P2c-v2_5p

mirBase accession

None

Sequence

0- CUAGCAGCACGUCAAAACUGGA -22

Get sequence

Star sequence

Sha-Mir-15-P2c-v2_3p*

mirBase accession

None

Sequence

41- CAGUAUUGCCUUGCUGCUUGAG -63

Get sequence