MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-15-P2c

Family name MIR-15 (all species)
Seed AGCAGCA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-16c
Paralogues Xtr-Mir-15-P1a  Xtr-Mir-15-P1b  Xtr-Mir-15-P1c  Xtr-Mir-15-P2a  Xtr-Mir-15-P2b 
Orthologues Aca-Mir-15-P2c  Ami-Mir-15-P2c  Bta-Mir-15-P2c  Cfa-Mir-15-P2c  Cin-Mir-15-P2  Cli-Mir-15-P2c  Cmi-Mir-15-P2c  Cpi-Mir-15-P2c  Cpo-Mir-15-P2c  Dno-Mir-15-P2c  Dre-Mir-15-P2c-v1  Dre-Mir-15-P2c-v2  Ete-Mir-15-P2c  Gga-Mir-15-P2c  Gja-Mir-15-P2c  Hsa-Mir-15-P2c  Lch-Mir-15-P2c  Loc-Mir-15-P2c  Mdo-Mir-15-P2c-v1  Mdo-Mir-15-P2c-v2  Mml-Mir-15-P2c  Mmu-Mir-15-P2c  Mun-Mir-15-P2c  Oan-Mir-15-P2c  Ocu-Mir-15-P2c  Pbv-Mir-15-P2c  Rno-Mir-15-P2c3  Rno-Mir-15-P2c4  Sha-Mir-15-P2c-v1  Sha-Mir-15-P2c-v2  Spt-Mir-15-P2c  Tgu-Mir-15-P2c  Xla-Mir-15-P2c1  Xla-Mir-15-P2c2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(xenTro9_add)
chr8: 47366675-47366740 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2c)
Mir-15-P2c chr8: 47366675-47366740 [-] UCSC Ensembl
Mir-15-P1c chr8: 47368668-47368725 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCUUACAUGUGUUCUAGCAAUCUUGCUUUAGCAGCACGUAAAUACUGGAGUUCAUGACCAUAUCUGCACUCUCCAGUAUUACUUUGCUGCUAUAUUAAGAUUGCCAUAAGUUGCACAAGGAAAU
Get precursor sequence
Structure
        10          20        30         40        50        60  
UUUCUUACAUGUGUUCUA--         CUU        C-|   A        UUCAUGACC 
                    GCAAUCUUG   UAGCAGCA  GUAA UACUGGAG         A
                    CGUUAGAAU   AUCGUCGU  CAUU AUGACCUC         U
UAAAGGAACACGUUGAAUAC         UAU        UU^   -        UCACGUCUA 
    120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Br Em Em Em Em He
Mature sequence

Xtr-Mir-15-P2c_5p

mirBase accessionMIMAT0003562
Sequence
0- UAGCAGCACGUAAAUACUGGAG -22
Get sequence
Proposed targets TargetScanVert: xtr-miR-16c
Star sequence

Xtr-Mir-15-P2c_3p*

mirBase accessionNone
Sequence
44- CCAGUAUUACUUUGCUGCUAUA -66
Get sequence