MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-15-P2c

Family name MIR-15 (all species)
Seed AGCAGCA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-15-P1a  Lch-Mir-15-P1b  Lch-Mir-15-P1c  Lch-Mir-15-P2a  Lch-Mir-15-P2b 
Orthologues Aca-Mir-15-P2c  Ami-Mir-15-P2c  Bta-Mir-15-P2c  Cfa-Mir-15-P2c  Cin-Mir-15-P2  Cja-Mir-15-P2c  Cli-Mir-15-P2c  Cmi-Mir-15-P2c  Cpi-Mir-15-P2c  Cpo-Mir-15-P2c  Dno-Mir-15-P2c  Dre-Mir-15-P2c-v1  Dre-Mir-15-P2c-v2  Eca-Mir-15-P2c  Ete-Mir-15-P2c  Gga-Mir-15-P2c  Gja-Mir-15-P2c  Hsa-Mir-15-P2c  Laf-Mir-15-P2c  Loc-Mir-15-P2c  Mdo-Mir-15-P2c-v1  Mdo-Mir-15-P2c-v2  Mml-Mir-15-P2c  Mmr-Mir-15-P2c  Mmu-Mir-15-P2c  Mun-Mir-15-P2c  Neu-Mir-15-P2c-v1  Neu-Mir-15-P2c-v2  Oan-Mir-15-P2c  Ocu-Mir-15-P2c  Pab-Mir-15-P2c  Pbv-Mir-15-P2c  Rno-Mir-15-P2c3  Rno-Mir-15-P2c4  Sha-Mir-15-P2c-v1  Sha-Mir-15-P2c-v2  Spt-Mir-15-P2c  Tgu-Mir-15-P2c  Xla-Mir-15-P2c1  Xla-Mir-15-P2c2  Xtr-Mir-15-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(LatCha1_add)		 JH126623.1: 2025608-2025670 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACUGUUGAAAUGAGUUUGUCAGCAGUACUUUAGCAGCACGUAAAUAUUGGAGUUCAGAAUUGCUGCUAUCUCCAGUAUUGCAAUGCUGCUAUUGUGAGGCUGUCACUGACCUGCGGAAGACUG
Get precursor sequence
Structure
        10          20        30        40        50        60 
ACUGUUGAAAUGAGUUU--|U    AG   UU        CGUA          UUCAGAAU 
                   G CAGC  UAC  UAGCAGCA    AAUAUUGGAG        \
                   C GUCG  GUG  AUCGUCGU    UUAUGACCUC        U
GUCAGAAGGCGUCCAGUCA^U    GA   UU        AACG          UAUCGUCG 
 120       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Mature sequence

Lch-Mir-15-P2c_5p (predicted)
mirBase accessionNone
Sequence 
0- UAGCAGCACGUAAAUAUUGGAG -22
Get sequence
Star sequence

Lch-Mir-15-P2c_3p* (predicted)
mirBase accessionNone
Sequence 
41- CCAGUAUUGCAAUGCUGCUAUU -63
Get sequence