Mir-15-P1d

MirGeneDB ID

Cpo-Mir-15-P1d

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-497

Paralogues

Cpo-Mir-15-P1a Cpo-Mir-15-P1b Cpo-Mir-15-P1c Cpo-Mir-15-P2a Cpo-Mir-15-P2b Cpo-Mir-15-P2c Cpo-Mir-15-P2d

Orthologues

Ami-Mir-15-P1d Bta-Mir-15-P1d Cfa-Mir-15-P1d Cin-Mir-15-P1 Cja-Mir-15-P1d Dno-Mir-15-P1d Dre-Mir-15-P1d Eca-Mir-15-P1d Ete-Mir-15-P1d Hsa-Mir-15-P1d Laf-Mir-15-P1d Loc-Mir-15-P1d Mdo-Mir-15-P1d Mml-Mir-15-P1d Mmr-Mir-15-P1d Mmu-Mir-15-P1d Neu-Mir-15-P1d Oan-Mir-15-P1d Ocu-Mir-15-P1d Pab-Mir-15-P1d Rno-Mir-15-P1d Sha-Mir-15-P1d Sto-Mir-15-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(cavPor3)

scaffold_61: 9616778-9616839 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-15-P1d)

Mir-15-P1d scaffold_61: 9616778-9616839 [+] UCSC
Mir-15-P2d scaffold_61: 9617085-9617145 [+] UCSC

Precursor
(pre-Mir +30nt flank)

UCUUAGCCCACCCUAGUCCUGCUCCCGCCCCAGCAGCACACUGUGGUUUGUACGGCACUGUGGCCACGUCCAAACCACACUGUGGUGUUAGAGCGAGGGUGGGGGAGGCACCGCGGAGGCCC

Get precursor sequence

Structure

        10          20        30        40        50        60
UCUUAGCCCACCCUAGU--| UG   C   CCC    G    C         UACGGCACU 
                   CC  CUC CGC   AGCA CACA UGUGGUUUG         G
                   GG  GGG GCG   UUGU GUGU ACACCAAAC         U
CCCGGAGGCGCCACGGAGG^ GU   A   AGA    G    C         CUGCACCGG 
120       110       100        90        80        70

Deep sequencing

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Comment

There is a one nucleotide polymorphism in the 3p arm in the assembled sequence relative to the read data.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Bl	Bl	Bl	Oo	Oo	Oo	Oo	To	Wh

Mature sequence

Cpo-Mir-15-P1d_5p

mirBase accession

MIMAT0047295

Sequence

0- CAGCAGCACACUGUGGUUUGUA -22

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Star sequence

Cpo-Mir-15-P1d_3p*

mirBase accession

MIMAT0047296

Sequence

40- CAAACCACACUGUGGUGUUAGA -62

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