MirGeneDB ID | Pab-Mir-15-P1d |
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Family name | MIR-15 (all species) |
Seed | AGCAGCA |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | Pab-Mir-15-P1a Pab-Mir-15-P1b Pab-Mir-15-P1c Pab-Mir-15-P2a Pab-Mir-15-P2b Pab-Mir-15-P2c Pab-Mir-15-P2d |
Orthologues | Ami-Mir-15-P1d Bta-Mir-15-P1d Cfa-Mir-15-P1d Cin-Mir-15-P1 Cja-Mir-15-P1d Cpo-Mir-15-P1d Dno-Mir-15-P1d Dre-Mir-15-P1d Eca-Mir-15-P1d Ete-Mir-15-P1d Hsa-Mir-15-P1d Laf-Mir-15-P1d Loc-Mir-15-P1d Mdo-Mir-15-P1d Mml-Mir-15-P1d Mmr-Mir-15-P1d Mmu-Mir-15-P1d Neu-Mir-15-P1d Oan-Mir-15-P1d Ocu-Mir-15-P1d Rno-Mir-15-P1d Sha-Mir-15-P1d Sto-Mir-15-P1d |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Olfactores |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054698.2: 6864875-6864936 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UUUCAACCCACCCCGGUCCUGCUCCCGCCCCAGCAGCACACUGUGGUUUGUGCGGCAUUGUGGCCACGUCCAAACCACACUGUGGUGUUAGAGCGAGGGUGGGGGAGGCACCGCCGAGGCUUGet precursor sequence |
Structure | 10 20 30 40 50 60 UUUCAACCCACCCCGGU--| UG C CCC G C UGCGGCAUU CC CUC CGC AGCA CACA UGUGGUUUG G GG GGG GCG UUGU GUGU ACACCAAAC U UUCGGAGCCGCCACGGAGG^ GU A AGA G C CUGCACCGG 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Mature sequence | Pab-Mir-15-P1d_5p |
mirBase accession | None |
Sequence |
0- CAGCAGCACACUGUGGUUUGUG -22
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|
Star sequence | Pab-Mir-15-P1d_3p* (predicted) |
mirBase accession | None |
Sequence |
40- CAAACCACACUGUGGUGUUAGA -62
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