MirGeneDB ID | Pab-Mir-15-P2d |
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Family name | MIR-15 (all species) |
Seed | AGCAGCA |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | Pab-Mir-15-P1a Pab-Mir-15-P1b Pab-Mir-15-P1c Pab-Mir-15-P1d Pab-Mir-15-P2a Pab-Mir-15-P2b Pab-Mir-15-P2c |
Orthologues | Aca-Mir-15-P2d Ami-Mir-15-P2d Bta-Mir-15-P2d Cfa-Mir-15-P2d Cin-Mir-15-P2 Cja-Mir-15-P2d Cpo-Mir-15-P2d Dno-Mir-15-P2d Dre-Mir-15-P2d Eca-Mir-15-P2d Ete-Mir-15-P2d Gja-Mir-15-P2d Hsa-Mir-15-P2d Laf-Mir-15-P2d Loc-Mir-15-P2d Mal-Mir-15-P2d Mdo-Mir-15-P2d Mml-Mir-15-P2d Mmr-Mir-15-P2d Mmu-Mir-15-P2d Neu-Mir-15-P2d Oan-Mir-15-P2d Ocu-Mir-15-P2d Rno-Mir-15-P2d Sha-Mir-15-P2d Sto-Mir-15-P2d |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Olfactores |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054698.2: 6864564-6864624 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UUUGUUGCCCACACCCAGCUUCCCUGGCUCUAGCAGCACAGAAAUAUUGGCACAGGGAAGCGAGUCUGCCAAUAUUGGCUGUGCUGCUCCAGGCAGGGUGGUGAAAACUACCGAGGAGGGGGet precursor sequence |
Structure | 10 20 30 40 50 UUUGUUGCCCACACCCA-- U G CU A-| CAGGGA GCU CCCUG CU AGCAGCACAG AAUAUUGGCA A UGG GGGAC GA UCGUCGUGUC UUAUAACCGU G GGGGAGGAGCCAUCAAAAG U G CC GG^ CUGAGC . 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Mature sequence | Pab-Mir-15-P2d_5p |
mirBase accession | None |
Sequence |
0- UAGCAGCACAGAAAUAUUGGCA -22
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|
Star sequence | Pab-Mir-15-P2d_3p* (predicted) |
mirBase accession | None |
Sequence |
38- CCAAUAUUGGCUGUGCUGCUCCA -61
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