Mir-15-P2d

MirGeneDB ID

Mdo-Mir-15-P2d

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-195

Paralogues

Mdo-Mir-15-P1a Mdo-Mir-15-P1c-v1 Mdo-Mir-15-P1c-v2 Mdo-Mir-15-P1d Mdo-Mir-15-P2a Mdo-Mir-15-P2b Mdo-Mir-15-P2c-v1 Mdo-Mir-15-P2c-v2

Orthologues

Aca-Mir-15-P2d Ami-Mir-15-P2d Bta-Mir-15-P2d Cfa-Mir-15-P2d Cin-Mir-15-P2 Cja-Mir-15-P2d Cpo-Mir-15-P2d Dno-Mir-15-P2d Dre-Mir-15-P2d Eca-Mir-15-P2d Ete-Mir-15-P2d Gja-Mir-15-P2d Hsa-Mir-15-P2d Laf-Mir-15-P2d Loc-Mir-15-P2d Mal-Mir-15-P2d Mml-Mir-15-P2d Mmr-Mir-15-P2d Mmu-Mir-15-P2d Neu-Mir-15-P2d Oan-Mir-15-P2d Ocu-Mir-15-P2d Pab-Mir-15-P2d Rno-Mir-15-P2d Sha-Mir-15-P2d Sto-Mir-15-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(monDom5_add)

2: 255708041-255708102 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2d)

Mir-15-P1d 2: 255707676-255707737 [+] UCSC Ensembl
Mir-15-P2d 2: 255708041-255708102 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GACCAUUACCAUCCUGGGCUUCCCUGGCUUUAGCAGCACAAAAAUAUUGGCACCUGAGGGAAAGCCAUGCCAGUAUUGAGAGUGCUGCUCUAGACAGGGUAGCUAGAGCAGCUGUGGGAAGA

Get precursor sequence

Structure

        10          20        30        40         50          
GACCAUUACCAUCCUGG--   U     G  UU        AAA-|         CCUGAGG 
                   GCU CCCUG CU  AGCAGCAC    AAUAUUGGCA       \
                   CGA GGGAC GA  UCGUCGUG    UUAUGACCGU       G
AGAAGGGUGUCGACGAGAU   U     A  UC        AGAG^         ACCGAAA 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Ce	He	Ki	Te

Mature sequence

Mdo-Mir-15-P2d_5p

mirBase accession

MIMAT0012760

Sequence

0- UAGCAGCACAAAAAUAUUGGCA -22

Get sequence

Proposed targets

TargetScanVert: mdo-miR-195

Star sequence

Mdo-Mir-15-P2d_3p* (predicted)

mirBase accession

None

Sequence

39- CCAGUAUUGAGAGUGCUGCUCUA -62

Get sequence