MirGeneDB 3.0
MirGeneDB ID

Aca-Mir-15-P2d

Family name MIR-15 (all species)
Seed AGCAGCA
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-457
Paralogues Aca-Mir-15-P1b  Aca-Mir-15-P1c  Aca-Mir-15-P2b  Aca-Mir-15-P2c 
Orthologues Ami-Mir-15-P2d  Bta-Mir-15-P2d  Cfa-Mir-15-P2d  Cin-Mir-15-P2  Cja-Mir-15-P2d  Cpo-Mir-15-P2d  Dno-Mir-15-P2d  Dre-Mir-15-P2d  Eca-Mir-15-P2d  Ete-Mir-15-P2d  Gja-Mir-15-P2d  Hsa-Mir-15-P2d  Laf-Mir-15-P2d  Loc-Mir-15-P2d  Mal-Mir-15-P2d  Mdo-Mir-15-P2d  Mml-Mir-15-P2d  Mmr-Mir-15-P2d  Mmu-Mir-15-P2d  Neu-Mir-15-P2d  Oan-Mir-15-P2d  Ocu-Mir-15-P2d  Pab-Mir-15-P2d  Rno-Mir-15-P2d  Sha-Mir-15-P2d  Sto-Mir-15-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(anoCar2)		 G889P6440RM16: 292-356 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACUCUCUCUCGGAGGGGCCGGUCCCGCUCCAGCAGCACUUCAAUAUUGGCAGUGUCCACCCCCUCCGGCCGCCAGUAUUGCCUGUGCUGCUCCAGGGGGGCUCGGCAUGCUCAGCCCGUUUGGG
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Structure
        10         20         30        40         50        60 
CACUCUCUCUCGGAGGG-    -     G  CC        UU-|         AGUGUCCAC 
                  GCCG GUCCC CU  AGCAGCAC   CAAUAUUGGC         C
                  CGGC CGGGG GA  UCGUCGUG   GUUAUGACCG         C
GGGUUUGCCCGACUCGUA    U     G  CC        UCC^         CCGGCCUCC 
   120       110       100        90        80        70
Deep sequencing
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CommentNot in assembly but in trace archive.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Sk Ta Ta To Wh
Mature sequence

Aca-Mir-15-P2d_5p
mirBase accessionMIMAT0021967
Sequence 
0- CAGCAGCACUUCAAUAUUGGCA -22
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Star sequence

Aca-Mir-15-P2d_3p*
mirBase accessionMIMAT0021968
Sequence 
42- CCAGUAUUGCCUGUGCUGCUCCA -65
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