MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-3613

Family name MIR-3613 (all species)
Seed GUUGUAC
Species Horse (Equus caballus)
MiRBase ID eca-mir-3613
Paralogues
Orthologues Bta-Mir-3613  Cfa-Mir-3613  Cja-Mir-3613  Cpo-Mir-3613  Dno-Mir-3613  Ete-Mir-3613  Hsa-Mir-3613  Laf-Mir-3613  Mdo-Mir-3613  Mml-Mir-3613  Mmr-Mir-3613  Neu-Mir-3613  Ocu-Mir-3613  Pab-Mir-3613  Sha-Mir-3613 
Node of Origin (locus) Theria
Node of Origin (family) Theria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009164.1: 21087975-21088033 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-3613)		 Mir-15-P1a CM009164.1: 21041772-21041830 [+] UCSC Ensembl
Mir-15-P2a CM009164.1: 21041912-21041976 [+] UCSC Ensembl
Mir-3613 CM009164.1: 21087975-21088033 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGCGCGCAACACGAUGGUUGGGUUUGGAUUGUUGUACUUUUUUUUUUGUUCGUUGCAUUUUUAGGAACAAAAAAAAAAGCCCAACCCUUCACACCACUUCAUCCGCAUCUCUGAGGAC
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Structure
        10        20          30        40        50         
CGGCGCGCAACACGAUGGUUG--|  U    UU    UA               GUUGCA 
                       GGU UGGA  GUUG  CUUUUUUUUUUGUUC      \
                       CCA ACUU  CAAC  GAAAAAAAAAACAAG      U
CAGGAGUCUCUACGCCUACUUCA^  C    CC    CC               GAUUUU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-3613_5p
mirBase accessionNone
Sequence 
0- UGUUGUACUUUUUUUUUUGUUC -22
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Star sequence

Eca-Mir-3613_3p*
mirBase accessionMIMAT0034742
Sequence 
37- ACAAAAAAAAAAGCCCAACCCU -59
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